Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01797 ATGTTGAAGGGTTACAAGCGTTTCTTCAGAAGAACTCTACTGGAAACTTCGGAGTATCTAAAAGATGACTGCCTTGTCATGCATTGCACTGTTGGTGTTGTCAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTATTGTGCCACAGTCAGACATGGGCCGAAATTTTAAGGACTTGCTGGACTCAGAGGTTTGTTGCGACATAGTTTTCAAGGTTAAAAGCGAGAGCTTCAAAGCTCATAAGTTAATACTTGCGGCACGATCTCCTGTGTTTAGAGCACAGTTTTTTGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCTTTTATCTTCAAGGTAGTCTTCAATTTTAATTAA 375 0.4107 MLKGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPQSDMGRNFKDLLDSEVCCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSLEEVVVEDIEPFIFKVVFNFN 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01797 124 SUPERFAMILY POZ domain 48 123 IPR011333 -
Vimu6g01797 124 ProSiteProfiles BTB domain profile. 66 124 IPR000210 GO:0005515
Vimu6g01797 124 Gene3D Potassium Channel Kv1.1; Chain A 32 123 IPR011333 -
Vimu6g01797 124 ProSiteProfiles MATH/TRAF domain profile. 1 31 IPR002083 GO:0005515
Vimu6g01797 124 Pfam BTB/POZ domain 56 123 IPR000210 GO:0005515
Vimu6g01797 124 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 4 123 IPR045005 GO:0016567
Vimu6g01797 124 SUPERFAMILY TRAF domain-like 4 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01797 Vimu-Chr6 16264586 16265247 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu6g01797 BTB 2.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01797 K10523 - gmx:100786636 220.705