Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01796 ATGGATCTTGCAATGCTTCTCTTCATTTATTCCGACAAACTTCCTGACATCTATGAAGTAATGGACTCAATGAATGTCTGCTCATATGCTGTCATGGTGCAGCATCTCCTGGCTGCTGCTGATCTGTATAATCTTGATCGGCTCAAACTTCTTTGTGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTAGCCACCACACTTGCCCTGGCAGAGCAACACCACTGCCCACAGCTGAAGGCAATCTGTTTGAAATTTATTGCAAATCCAGCAAATTTAGGAGGTATGTATCATTTTAGAATATGA 309 0.4045 MDLAMLLFIYSDKLPDIYEVMDSMNVCSYAVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATTLALAEQHHCPQLKAICLKFIANPANLGGMYHFRI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01796 102 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 4 87 IPR045005 GO:0016567
Vimu6g01796 102 SUPERFAMILY POZ domain 4 59 IPR011333 -
Vimu6g01796 102 Gene3D Potassium Channel Kv1.1; Chain A 3 57 IPR011333 -
Vimu6g01796 102 Pfam BTB/POZ domain 4 58 IPR000210 GO:0005515
Vimu6g01796 102 Gene3D - 58 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01796 Vimu-Chr6 16263440 16264455 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu6g01796 BTB 8.3e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01796 K10523 - gmx:100778300 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02206 6 19359204 19362773 Vimu6g01796 6 16263440 16264455 ECH
Vimu6g01796 6 16263440 16264455 Vimu6g01796 6 16263440 16264455 ECH