Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01788 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGCATATACGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCGAATAGAGGAGGGGGTGGTGGTCGTCATCTAGAGCAACCCGAAGAGGAAAACATGGCTTGGCCAGCTCCATCTAGATCACGGGATGACCGTGCTAGATCTCGGAAAGAGAAAGAAGATTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACGGGTAGATGGCGAACAGGAGCAAGAATTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCTTCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTATCGCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATTTATGGCGATTGTTTAGGAGTCGGTCACAGTTATTTTCATCCAGACTGCTTCCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGTATCCATATCACAAGTCCTGTTTCAAGGAACTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAGTATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGAATGAAAGATACTGTAGATTAGAAGACGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAAGCGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAACATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACTAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGGCGGCCAAGGATTGGAGGTCATAGATTGATAGGGATGAGATCTCAACCTCAAAAGTTGATTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCATAACCTCAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTCCTCTCTTACATGTGGCTCGAGGCAGAGGTGATGTCATGTTCTAGAACCATGCCATCAACATCATCAGCTTCTTCCTCCTCCTCCTTCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAGCATATTCGTTTGACTGGTAATTTCCCAGTGTGA 1530 0.4399 MAPPSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSNRGGGGGRHLEQPEEENMAWPAPSRSRDDRARSRKEKEDLDHAIALSLGENFKRPTGRWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGIASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKYPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRNERYCRLEDGRILCFECMESAISDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVMSCSRTMPSTSSASSSSSFSHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGNFPV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01788 509 ProSitePatterns LIM zinc-binding domain signature. 146 179 IPR001781 -
Vimu6g01788 509 SMART lim_4 145 196 IPR001781 -
Vimu6g01788 509 Pfam Protein DA1 294 504 IPR022087 -
Vimu6g01788 509 Gene3D Cysteine Rich Protein 140 203 - -
Vimu6g01788 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Vimu6g01788 509 PANTHER PROTEIN DA1-RELATED 2 33 508 IPR045218 -
Vimu6g01788 509 ProSiteProfiles LIM domain profile. 144 203 IPR001781 -
Vimu6g01788 509 MobiDBLite consensus disorder prediction 50 80 - -
Vimu6g01788 509 MobiDBLite consensus disorder prediction 44 80 - -
Vimu6g01788 509 CDD LIM_DA1 146 197 - -
Vimu6g01788 509 Pfam LIM domain 146 198 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01788 Vimu-Chr6 16203067 16207866 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu6g01788 DA1-like 5.1e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01788 - - gmx:100798829 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01788 6 16203067 16207866 Vimu6g01788 6 16203067 16207866 ECH
Vimu6g01788 6 16203067 16207866 Vimu1g00990 1 7186241 7190328 PCT