Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01765 TCATTGAAGCCGATCCAGTGCCTTGTGAATTTGGAATTGGTGGTGAAATTAGATCTAAAAGCCACAGCAATGTCTTTTATCGGAACCCAGCAAAAGTGCAAGGCTTGCGAGAAAACGGTTTATCCCGTTGATCAGCTTTCTGCAGATGGCACTGCTTATCACAAAGCTTGCTTCAGGTGCTCCCACTGCAAAGGAACATTAAAGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTTTACTGTAAACCTCACTATGAGCAGCTCTTCAAGGAGACTGGCACCTTCAGCAAGAACTTCCAGTCACCTGCAAAGTTAGCTGATAAGACTACTCCTGAGCTGACAAGGTCATCTAGTAAAGCTGCGAGCATGTTTTCTGGCACACAAGAAAAGTGTGCAACATGTGGGAAAACTGCTTATCCATTGGAGAAGGTGACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCCATAACCCCATCGAATTATGCAGCCCTTGAGGGCATTCTGTATTGCAAGCACCATTTCTCCCAGCTTTTCAAGGAGAAAGGGAGCTATAATCATCTGACAAAGTCTGCGTCAATCAAACGGGCGGCGGCAGCAGCAGCAGCCACTGTTCCAGAATCTTGA 651 0.4624 SLKPIQCLVNLELVVKLDLKATAMSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFSKNFQSPAKLADKTTPELTRSSSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASIKRAAAAAAATVPES 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01765 216 ProSiteProfiles LIM domain profile. 129 189 IPR001781 -
Vimu6g01765 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 59 99 - -
Vimu6g01765 216 Gene3D Cysteine Rich Protein 27 97 - -
Vimu6g01765 216 Gene3D Cysteine Rich Protein 125 195 - -
Vimu6g01765 216 FunFam LIM domain and actin-binding 1 125 195 - -
Vimu6g01765 216 ProSitePatterns LIM zinc-binding domain signature. 33 67 IPR001781 -
Vimu6g01765 216 ProSiteProfiles LIM domain profile. 31 91 IPR001781 -
Vimu6g01765 216 CDD LIM2_SF3 131 191 - -
Vimu6g01765 216 PANTHER OS06G0237300 PROTEIN 21 132 - -
Vimu6g01765 216 SMART lim_4 32 84 IPR001781 -
Vimu6g01765 216 SMART lim_4 130 182 IPR001781 -
Vimu6g01765 216 CDD LIM1_SF3 29 91 - -
Vimu6g01765 216 Pfam LIM domain 33 88 IPR001781 -
Vimu6g01765 216 Pfam LIM domain 131 186 IPR001781 -
Vimu6g01765 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 196 - -
Vimu6g01765 216 FunFam LIM domain and actin-binding 1 27 97 - -
Vimu6g01765 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 58 - -
Vimu6g01765 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01765 Vimu-Chr6 16024807 16027302 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vimu6g01765 LIM 3.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01765 K09377 - gmx:100809121 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01765 6 16024807 16027302 Vimu6g01765 6 16024807 16027302 ECH