Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01757 ATGTCGGACGCTTTGATCAATGGATTGGCCGGAGCTGGAGGTGGGATCATTGCTCAGCTCATCACGTACCCACTTTCAACTGTAAACACTCGTCAACAAACCGAGCGTGATCCGAAGAGAGAGACAAGCAGCCAAGGTGCCCTCGAACGAATGTGCAAGGTTGTAAAAGAAGAAGGGTGGGAACGGTTGTACGGAGGCTTGATGCCATCTCTAGTGGGTACCGCTGCGTCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACATGGCTGAAGCAGCTGCGCTACAGAAAAAGAAACTGGGTGTCAGTGATGGATCAGTTGGGATGCTGTCCTCTCTTCTCACTGCTGCTTTATCCGGGTGTGTTAACGTGCTCTTGACAAATCCCATATGGGTAGTTGTTACCCGTATGCAGGCACATAGAAAAGAGTCGAACCATGCACCTGATCAAGGTTTGTTAGTTGCCACTGAGCAAGAAACTATTTCTGTGGTTGAGCCTCTTCCTTACGGAACTAGCCGTGTGATTCAAGAAATCTTTGATGAAGCTGGTATTCGGGGTTTCTGGAAAGGTGTATTACCATCACTGATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAAGCCATGTTGTCAAAGTTAAGAAAAAGACGTAACAGCAACAGGGTAACTGCTGTAGAGATATTTTTTCTTGGGGCTATGGCTAAGCTTGGAGCTACTGTTGTAACTTATCCACTCCTTGTTGTAAAGGCGAGGCTCCAGGCTAGGCAGGATAAAACAGGAGACAGGAGGCACCATTACAAAGGTACCAAGGATGCTATTATTAAAATGATCCGCTATGAAGGGTTGAATGGGTTTTACAAAGGTATGGGCACAAAAATTGTACAAAGTGTGCTTGCTGCTGCTGTTATATTCACCATGAAAGAAGAACTGGTTAGGGGGGTTCACTTCTTGCTTGCCAAGCAAGCTGCCAAAACTGTAAAGCTAAAGCCTGTCTGA 1008 0.4554 MSDALINGLAGAGGGIIAQLITYPLSTVNTRQQTERDPKRETSSQGALERMCKVVKEEGWERLYGGLMPSLVGTAASQGVYYYFYQIFRNMAEAAALQKKKLGVSDGSVGMLSSLLTAALSGCVNVLLTNPIWVVVTRMQAHRKESNHAPDQGLLVATEQETISVVEPLPYGTSRVIQEIFDEAGIRGFWKGVLPSLIMVSNPSIQFMLYEAMLSKLRKRRNSNRVTAVEIFFLGAMAKLGATVVTYPLLVVKARLQARQDKTGDRRHHYKGTKDAIIKMIRYEGLNGFYKGMGTKIVQSVLAAAVIFTMKEELVRGVHFLLAKQAAKTVKLKPV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01757 335 MobiDBLite consensus disorder prediction 33 48 - -
Vimu6g01757 335 SUPERFAMILY Mitochondrial carrier 3 313 IPR023395 -
Vimu6g01757 335 Gene3D Mitochondrial carrier domain 101 316 IPR023395 -
Vimu6g01757 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 216 IPR018108 -
Vimu6g01757 335 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 319 IPR044712 GO:0006862|GO:0055085
Vimu6g01757 335 Gene3D Mitochondrial carrier domain 2 100 IPR023395 -
Vimu6g01757 335 MobiDBLite consensus disorder prediction 29 48 - -
Vimu6g01757 335 Pfam Mitochondrial carrier protein 227 316 IPR018108 -
Vimu6g01757 335 Pfam Mitochondrial carrier protein 109 219 IPR018108 -
Vimu6g01757 335 Pfam Mitochondrial carrier protein 7 91 IPR018108 -
Vimu6g01757 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 317 IPR018108 -
Vimu6g01757 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 91 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01757 Vimu-Chr6 15969406 15973784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01757 24 316 Chloroplast and Mitochondria Gene Families AT1G25380 27.852 1.31e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01757 K13354 - gmx:100775784 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01757 6 15969406 15973784 Vimu6g01757 6 15969406 15973784 ECH