Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01754 ATGTGCTCTCCTTGTGATTCAGTCAGTGTGATCTCAAAATGCAAAGTTGTTCCTCAGAAGAAGTCTACTATGGCAGATCTGAAACTCTCAATCTCAGACCTTAACATGCTCTTATGTCATTACATCCAAAAGGGGTGTCTCTTCACCACCCCATCTCTACCGTCACAAGCTCTCATCCCTCATCTCACCAAAGCACTATCTCACACCCTCTCCCTTTTTCCTCCCTTCGCAGGTCGCCTCAAAACTGATGTTGACGGCTATGTCTACATCACATGTAACGACGCTGGCGTCGATTTCATCCACGCTACCGTCACTCATATCTCCCTCGCCGACCTCCTGTCACCTTCCGATGTTCATCCAACCTTTAAGCACCTCTTTCCTTTCCACCACAAAATTAGTTACACAGCTCATTCCTCCCCTATCATGGCCTTTCAGGTCACCGAGCTCGCCGACGGTGTTTTCATAGGTTGTGCTGTCTGTCATGCCGTCACCGACGGTGCCTCCTTTTGGAACTTCTTTAACACTTTCGCAGCAATTTCTCGAGGAGAAACCGCTTGTCTCTCCAGCCTCCCGGATTTTCGTCGGGATTCCATCCTCACCTCCAAGGTCGTGCTTCAACTTCCGAAAGTAGAAATAAAGGCCACCTTCAATGTTGAAGCGCCATTTCGCGAGAGAATCTTCAGTTTCAGCCATGAATCAATTCAGAAGCTGAAAGCTTTAGTGAACAAACGTCCGATCATGTTCACTCCAGAGAACATTGATGTCGCGGATGAGACGATGGCGAAGCTGAACACCGACACACGACTGGAAACAGCTACAGAAGGCGTAAGGGGTGAAACAACAGAGATTTCTTCATTCCAATCGTTGTGCGCACTGATGTGGAAGTGCGTGACTAGGGCGAGGAATATGGAGAAGACTAAAGTGACGACGTTTAGAACTGCCGCTAATATTCGGCAACGCATGAAGCCCAAGTTGGGGGATTGTTACTTCGGGAATGCGCTTCAGAGCATTACCACGTGTGCAACAGTGGGTGATGTGGTGTTGAAGGACCTTCAATGGTGCGCAGAGCAACTGAGTCGGAGCGTGAAGGCGTTTGATAGCGCCACGGTGCAGCGTAATGTGGAGAACTGGGAGCGTGAGCCAAAGTGCTACGAGTTAGGCAACCATGACGGCGCCACTGTGCAGATGGGAAGCTCGCCAAGATTTCCGATGTATGACAACGATTTTGGATGGGGGAGGCCCATAACGGTGCTGAGCGGCGGAGCAAACAAGTTTGACGGCAAAATGTCGGCGTTTCCTGGAAGAAATGGCGATGGCAGCGTCGACGTGGAGGTGGTTTTGGCGCCTGAAACAATGGCGCAACTGGAGTCCGATCCCGAATTCATGCTTTACGTGTCTGCCCAGTGCGTAGAGACACGTGTTTGA 1425 0.5032 MCSPCDSVSVISKCKVVPQKKSTMADLKLSISDLNMLLCHYIQKGCLFTTPSLPSQALIPHLTKALSHTLSLFPPFAGRLKTDVDGYVYITCNDAGVDFIHATVTHISLADLLSPSDVHPTFKHLFPFHHKISYTAHSSPIMAFQVTELADGVFIGCAVCHAVTDGASFWNFFNTFAAISRGETACLSSLPDFRRDSILTSKVVLQLPKVEIKATFNVEAPFRERIFSFSHESIQKLKALVNKRPIMFTPENIDVADETMAKLNTDTRLETATEGVRGETTEISSFQSLCALMWKCVTRARNMEKTKVTTFRTAANIRQRMKPKLGDCYFGNALQSITTCATVGDVVLKDLQWCAEQLSRSVKAFDSATVQRNVENWEREPKCYELGNHDGATVQMGSSPRFPMYDNDFGWGRPITVLSGGANKFDGKMSAFPGRNGDGSVDVEVVLAPETMAQLESDPEFMLYVSAQCVETRV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01754 474 Pfam Transferase family 7 462 - -
Vimu6g01754 474 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 462 - -
Vimu6g01754 474 Gene3D - 8 211 IPR023213 -
Vimu6g01754 474 Gene3D - 212 457 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01754 Vimu-Chr6 15936828 15938450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01754 32 456 Monolignol Biosynthesis Gene Families AT5G48930 28.833 6.00e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01754 - - vum:124828482 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01754 6 15936828 15938450 Vimu6g01754 6 15936828 15938450 ECH
Vimu6g01754 6 15936828 15938450 Vimu1g00938 1 6570092 6571552 ECH
Vimu1g00938 1 6570092 6571552 Vimu6g01754 6 15936828 15938450 PCT