Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01753 ATGACTTCTTATCTGTGTGAAGAAATGGCTATCATATCAAAATGCACTGTTGTTCCTCACCAAAACTCCACTCTCCGAGACCTAAAGCTCTCCATCTCAGACCTTAACATGTTTTTGGCTCACTACATCCAAAAGGGCTGTCTCTTCACCACCCCATCTCTCCCTTCTCACATTCTTATCCCTCACCTCACCAACGCGCTATCTCGCACGCTCTCAATTTTTCCTCCTTTAGCTGGCCGATTCAAAACGAATTCCGACGGCCACGTCTATATCGCATGCAACGACGCTGGCGTTGACTTCATTCACGCCACCGCCACCGATCTCTCTGTCACCGACCTCCTGTCGCCGTCCGATGTCCACCCGGCCTTTAAGAAATTCTTCCCTTTTCACCACAAACTCAGTTACACCGCCCATTCCTCCCCCATCATGGCCATTCAGGTCACTCAACTCGCTGACGGTATTTTCATCGGTTGCGCCGTCTGCCATGCTGTTACCGACGGCTCCTCCTTTTGGAACTTCTTTAACACCTTTTCTGCAGTTTCTCGCGGAGGACTCATATGTCCCTCTAGGCTCCCGGATTTTCACCGGGAATCAATCCTCATGTCGAAAGTCGTTCTTCGAATGCCCCAAGAAATGAAGGTTACCTTCGATGTTGAGTCGCCCTTTCGAGAGAGAATCTTCAGTTTCAGTCGTGAATCGATTGAGAAGTTGAAAAGCTCGGTGAACAACAGTAGGAAAATATTTGGAGAAGAGGAGGTGGAGGTTGAGTTAATGGCGAAGCTGAGCAATGACACAGAATTGAAAAAGGTCGCAGTGGGCGAAACAACAGAGATTTCTTCGTTTCAGGCCTTATGCGCGCTGGTGTGGCGTTGCGTGACTAGAGCAAGGAATTTGGAGAAGGGTAAAACGACGACGCTCCGAATGGCAGTAAATGTTCGGCAACGTTCGGAGCCTAAGTTGGGGGATTGTTACTTCGGGAATGCGATTCAAAGCATCGTGACGCATGCAGCAGTTGGTGACGTGGTGTCCATGGACCTTGGCTGGTGTGCGGAACAGGTGCACAAGAGCGTGATGGCGTTCAGTAGTGATACGGTGCGTTGTAACGTGGAGAATTGGGAGCGTGAGCCCAAGTGCTTCGAGTTAGGGAACCATGACGGTGCCACCGTGCAGATGGGAAGCTCTCCAAGATTTCCGATGTACGACAACGATTTCGGGTGGGGACGGCCATTGGCCGTGCGAAGTGGTGGAGCTAACAAGTTCGATGGAAAACTGTCGGCGTTTCCCGGGAGAAATGGCGGTGGCAGCACCGATTTGGAAGTGGTTTTGGCGCCTGACACGATGGCGCGTCTGGAGTCTGATCCTGAGTTCATGATTTACGTGTGTGGACAATAG 1392 0.5093 MTSYLCEEMAIISKCTVVPHQNSTLRDLKLSISDLNMFLAHYIQKGCLFTTPSLPSHILIPHLTNALSRTLSIFPPLAGRFKTNSDGHVYIACNDAGVDFIHATATDLSVTDLLSPSDVHPAFKKFFPFHHKLSYTAHSSPIMAIQVTQLADGIFIGCAVCHAVTDGSSFWNFFNTFSAVSRGGLICPSRLPDFHRESILMSKVVLRMPQEMKVTFDVESPFRERIFSFSRESIEKLKSSVNNSRKIFGEEEVEVELMAKLSNDTELKKVAVGETTEISSFQALCALVWRCVTRARNLEKGKTTTLRMAVNVRQRSEPKLGDCYFGNAIQSIVTHAAVGDVVSMDLGWCAEQVHKSVMAFSSDTVRCNVENWEREPKCFELGNHDGATVQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKLSAFPGRNGGGSTDLEVVLAPDTMARLESDPEFMIYVCGQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01753 463 Gene3D - 217 452 IPR023213 -
Vimu6g01753 463 Pfam Transferase family 10 457 - -
Vimu6g01753 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 457 - -
Vimu6g01753 463 SUPERFAMILY CoA-dependent acyltransferases 36 183 - -
Vimu6g01753 463 Gene3D - 9 216 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01753 Vimu-Chr6 15931541 15933433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01753 33 451 Monolignol Biosynthesis Gene Families AT5G48930 28.176 2.09e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01753 - - gmx:100799704 706.442