Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01752 ATGGACGTGATAAAGACGCAGCAAATCTCATCTCGACCAATCGAGAAGGTCGTGGTTCATCCGCTCGTGCTTCTTAGCATCGTCGACAACTACAATAGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTCGGCTCATCTTTCAAAGGCACCGTCGACGTTACCAACAGCTACGCCGGTTCATCTATACTTTGTTCCGCATCACAACAGCCACTCAGAACACTTTCTCTTTCATTCGCCTGCCTTGCTTTCTTAAGCCATCCTTTCCCATCTCCCCGACCCTTTCTTGCTGATTCCCTTCACATCTTCCTCATCTCTGGACGCTTGCCGTTTGAAGAAGATGACAAGGATCCGAGCATCTGGTTTCTTGACCACAATTACCATGAATCAATGTTTTCCATGTTTAAAAGAATAAATGCGAAGGAGCATGTTGTGGGGTGGTATAGCACAGGTCCAAAGCTGCGTGAAAATGACCTTGACATTCATGGCTTATTTAATGATTATGTTCCAAATCCTGTCTTGGTTATCATTGATGTTGAACCCAAGGAATTAGGAATCCCAACAAAAGCATATTACGCTGTTGAAGAGGTTAAAGAGAATGCCACCCAAAAAAGCCAAAAGGTCTTTGTACATGTGCCATCAGAGATTGCAGCTCATGAAGTTGAAGAAATAGGAGTCGAGCATTTACTTAGAGATGTAAAGGATACAACCATTAGCACCCTTGCGACCGAGGTAAGTGCAAAACTTACAGCCTTGAAGGGTTTGGATGCTAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTTAACCTGCTACCAAATCTTAACGTGGCTGATCTTATCAAGGCGTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGGTTAGATACAATTCCTGA 1026 0.4396 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAGSSILCSASQQPLRTLSLSFACLAFLSHPFPSPRPFLADSLHIFLISGRLPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKVRYNS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01752 341 Pfam Maintenance of mitochondrial structure and function 223 334 IPR024969 -
Vimu6g01752 341 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 111 173 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu6g01752 341 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 62 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu6g01752 341 Gene3D Cytidine Deaminase, domain 2 9 243 - -
Vimu6g01752 341 SMART pad1_6 16 199 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu6g01752 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 336 - -
Vimu6g01752 341 CDD MPN_RPN7_8 15 339 IPR033858 GO:0005838
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01752 Vimu-Chr6 15925430 15928349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01752 19 297 Eukaryotic Initiation Factors Gene Family AT2G39990 23.675 2.89e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01752 K03038 - gmx:100790393 542.347