Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01750 TGCAGAATCGAACCTCTGAACATGGCGTCGAGCGATCGCACAGTGTTACAATTCTCTTCATCATCTTCATCTTCTCAAAGTTTCTCCGCGAAGGTTCACCCTCTCGTTATCTTCAACATCTGCGATTGCTACGTTCGGCGTCCTGACCAAGCCGACCGCGTCATCGGAACCCTACTCGGATCCGTCCTTCCCGACGGAACCGTAGATATTCGCAATTCCTATGCTGTTCCTCACAATGAGTCAATTGAGCAGGTTGCTCTGGATATAGAGTACCACCACAATATGTTAGTATCCCACCAAAAAGTGAATCCAAAAGAAATCATAGTTGGATGGTATTCTACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTACAAAATCCCATACATTTGACTGTTGATACTGGATTTACAAATGGAGGTGGTACCATCAAAGCATACGTGTCTAACAATTTATCCCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATCCCATTAGATCTTCGTATGGTTGAAGCTGAGCGAATTGGATTTGATATGCTCAAGGCAACTGCAGTTGACAAAATTCCTTCAGATTTAGAAGGGATGGAAGCATCGATGCAACATCTACTAGTCTTGATTGATGATATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCACCAGACAACAAAATCGGGAGATTTATATCAGACGCTGTAGGTTCCCTTCCGAAAGTGTCTCCTCGAGTTTTTGATAAGCTTGTGAATGATAGCTTGCAGGATCACTTGCTTTTGCTATATTTATCTAGCATCACAAGAACGCAGCTTAGCTTGGCCGAGAAGTTGAACACAGCTGCCCAAATTCTGTGA 888 0.4347 CRIEPLNMASSDRTVLQFSSSSSSSQSFSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLVSHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQNPIHLTVDTGFTNGGGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVSPRVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01750 295 FunFam Eukaryotic translation initiation factor 3 subunit F 16 196 - -
Vimu6g01750 295 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 18 292 - -
Vimu6g01750 295 SMART pad1_6 29 160 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu6g01750 295 CDD MPN_eIF3f 31 288 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vimu6g01750 295 Pfam Maintenance of mitochondrial structure and function 182 288 IPR024969 -
Vimu6g01750 295 Gene3D Cytidine Deaminase, domain 2 17 196 - -
Vimu6g01750 295 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 28 291 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vimu6g01750 295 ProSiteProfiles MPN domain profile. 30 161 IPR037518 -
Vimu6g01750 295 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 134 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01750 Vimu-Chr6 15914307 15917735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01750 9 295 Eukaryotic Initiation Factors Gene Family AT2G39990 75.601 3.27e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01750 K03249 - gmx:100790913 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01750 6 15914307 15917735 Vimu6g01750 6 15914307 15917735 ECH