Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01749 ATGGAGGGAAAGGAGCAAGATGTTTCATTGGGAGCGAACAAATTCTCAGAGAGGCAACCCATTGGGACTGCGGCTCAGAGCCAAGACGATGGAAAGGACTACCAAGAGCCTCCGCCGGCTCCACTATTCGAACCCTCCGAACTCACTTCTTGGTCCTTCTACAGAGCCGGAATAGCCGAGTTTGTCGCTACTTTTCTTTTCCTCTACATAACTATCTTAACCGTCATGGGTGTCAATAGGTCCGATTCCAAGTGCGCAACCGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGTATGATCTTCGCTCTCGTTTACTGCACCGCTGGAATCTCAGGGGGACACATAAACCCGGCTGTGACATTCGGACTCTTCTTGGCGAGGAAATTGTCGTTGACTAGGGCGCTGTTCTACATGGTGATGCAGGTTCTGGGTGCTATCGTTGGTGCTGGTGTGGTCAAAGGTTTCGAGGGAAAAACCTTCTTCGGGAAACACAACGGTGGTGCTAACTTCGTTGCCTCTGGTTACACCAAGGGTGATGGACTCGGTGCTGAGATTGTTGGTACCTTCGTTCTTGTCTACACTGTTTTCTCAGCCACTGACGCCAAGCGTAACGCTAGAGACTCACACGTTCCTATTTTGGCACCCTTGCCCATTGGATTCGCTGTGTTCTTGGTGCACTTGGCCACCATTCCAATCACTGGCACCGGTATCAACCCTGCTCGAAGTCTCGGTGCTGCCATCATTTTCAACAAAGATCTTGGCTGGGATGACCACTGGATTTTCTGGGTTGGACCCTTCGTTGGAGCCGCTCTTGCGGCTCTGTACCACCAAGTCGTAATCAGAGCCATTCCCTTCAAATCCAACTAA 870 0.5126 MEGKEQDVSLGANKFSERQPIGTAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSDSKCATVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAIVGAGVVKGFEGKTFFGKHNGGANFVASGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFVGAALAALYHQVVIRAIPFKSN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01749 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Vimu6g01749 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Vimu6g01749 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Vimu6g01749 289 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g01749 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01749 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Vimu6g01749 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 285 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01749 Vimu-Chr6 15910761 15911952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01749 1 289 Major Intrinsic Protein MIP AT4G23400 84.429 4.28e-170 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01749 K09872 - gmx:100791447 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01749 6 15910761 15911952 Vimu6g01749 6 15910761 15911952 ECH
Vimu6g01749 6 15910761 15911952 Vimu1g00935 1 6544439 6544831 PCT