Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01747 ATGGCGGTGAAACTGACAAAAGCGCAGAAGAAGATAGCCTACGATGCCAAACTCCGTCGGCTTCTGGATAACTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTGGGATCCAACCAGCTTCAGAACATCCGACAGGGTCTACGTGGCGACTCCGTGGTGCTCATGGGAAAGAACACCATGATGAAACGCTCTGTCAAACTCCACGCTGAGAGCACCGGCAACAAGGCCTTCCTCAACCTTGTGCCTCTTCTAGTGGGTAATGTTGGGTTGATTTTCACCAAAGGTGACGTGAAGGAGGTCAGCGAAGTGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGGTTGATTGCACCTATTGATGTTGTAGTTCCTCCGGGCAACACAGGGTTGGATCCCTCTCAAACTTCCTTTTTCCAGGTACTGAACATTCCTACAAAAATTAACAAGGGTACTGTGGAAATTATCACTCCTGTGGAACTGATTAGGAAGGGTGAGAAAGTTGGGTCTTCTGAAGCTGCATTGCTTTCGAAGCTTGCGATAAGGCCATTCTCGTATGGGCTTGTTGTGGTTTCTGTTTATGACAACGGTTCGGTGTTTAGTCCTGCGGTTCTTGACCTCACTGACGATGACCTCCTTAATATGTTTGCTGATGGTGTTTCCATGCTCTCTTCACTGTCGTTGGCTATCTCCTACCCTACAATTGCAGCTGCACCACACATGTTCGTTAATTCCTTTAAGAACGTCCTCGCTGTTGCAGTGGCCACAGAATATTCGTTCCCCCAGGCTGACGAGGTTAAGGAGTACCTCAAGGATCCTAGTAAATTTGCAGTAGCTGCTGTTGTTGCCGCACCTGCTACTGGTTCTGCTCCAGCTGCTGCCTCCAAGGAGGAGGAAAAGAAGGAAGAACCAGAAGAATCTGATGACGACATGGGCTTCAGTTTGTTTGATTAA 960 0.4896 MAVKLTKAQKKIAYDAKLRRLLDNYTQILVVAADNVGSNQLQNIRQGLRGDSVVLMGKNTMMKRSVKLHAESTGNKAFLNLVPLLVGNVGLIFTKGDVKEVSEVVAKYKVGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLSKLAIRPFSYGLVVVSVYDNGSVFSPAVLDLTDDDLLNMFADGVSMLSSLSLAISYPTIAAAPHMFVNSFKNVLAVAVATEYSFPQADEVKEYLKDPSKFAVAAVVAAPATGSAPAAASKEEEKKEEPEESDDDMGFSLFD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01747 319 CDD Ribosomal_P0_L10e 9 185 - -
Vimu6g01747 319 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Vimu6g01747 319 MobiDBLite consensus disorder prediction 288 319 - -
Vimu6g01747 319 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vimu6g01747 319 Gene3D - 6 209 IPR043141 -
Vimu6g01747 319 Gene3D - 114 185 IPR043164 -
Vimu6g01747 319 FunFam 60S acidic ribosomal protein P0 113 186 - -
Vimu6g01747 319 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 305 - -
Vimu6g01747 319 PIRSF L10E 1 319 IPR030670 GO:0042254
Vimu6g01747 319 Pfam 60s Acidic ribosomal protein 234 318 - -
Vimu6g01747 319 MobiDBLite consensus disorder prediction 304 319 - -
Vimu6g01747 319 Pfam Ribosomal protein L10 7 108 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01747 Vimu-Chr6 15884331 15886483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01747 1 318 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.616 4.36e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01747 K02941 - qsa:O6P43_008964 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01747 6 15884331 15886483 Vimu6g01747 6 15884331 15886483 ECH