Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01724 ATGGCCTCCAGAGGAACTGGAACGCTGATTTGGGTGTGTCTGTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACAGAACCAATCAACCTCCCTCACGTGATCAGCGCTTGGATATCCCTTTGGGACAAGATTTGGAGGGTGTCACTCACAAGGTGTATTTCGACATAGAGATCCATGGGAAATTAGCGGGTCGCATAGTCATGGGCCTTTTTGGAAACACAGTTCCGAAAACTGTAGGATTTGGTGGTGCCACTACTTATGTTGCTGATAGTGTTCTCCCTTATATATATGATCAGTTGGAATCAATCTTGATCTGTATAAATTCTCTTGGTAGTAAAAACTACAAATTTGAACAGCGTCTCATTTCAGGAGAGAAAGGAAAGGGAAGAAGTGGGGTGTCTCTTCATTATAAAGGAAGCACATTCCATAGGATCATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGAGGAGAATCAATCTATGGTGAAAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATTCTGGACCAGGATATTTATCTATGGCGAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTATGGACGTATTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAATAAGGTCGTCATATCAGACAGTGGAGAATTAACTTCATGA 795 0.4365 MASRGTGTLIWVCLLWLFFLCATIAFFQLHLVDNRTNQPPSRDQRLDIPLGQDLEGVTHKVYFDIEIHGKLAGRIVMGLFGNTVPKTVGFGGATTYVADSVLPYIYDQLESILICINSLGSKNYKFEQRLISGEKGKGRSGVSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGEKFADENFKLKHSGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVISDSGELTS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01724 264 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 146 163 IPR020892 GO:0003755|GO:0006457
Vimu6g01724 264 SUPERFAMILY Cyclophilin-like 129 262 IPR029000 -
Vimu6g01724 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 94 IPR002130 GO:0000413|GO:0003755
Vimu6g01724 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 209 IPR002130 GO:0000413|GO:0003755
Vimu6g01724 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 209 221 IPR002130 GO:0000413|GO:0003755
Vimu6g01724 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 222 237 IPR002130 GO:0000413|GO:0003755
Vimu6g01724 264 MobiDBLite consensus disorder prediction 250 264 - -
Vimu6g01724 264 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 118 262 - -
Vimu6g01724 264 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 60 262 - -
Vimu6g01724 264 Gene3D - 120 264 IPR029000 -
Vimu6g01724 264 Gene3D - 52 93 IPR029000 -
Vimu6g01724 264 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 258 IPR002130 GO:0000413|GO:0003755
Vimu6g01724 264 SUPERFAMILY Cyclophilin-like 57 88 IPR029000 -
Vimu6g01724 264 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 261 IPR002130 GO:0000413|GO:0003755
Vimu6g01724 264 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01724 Vimu-Chr6 15730902 15733233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01724 145 256 U-box Gene Family AT5G67530 50.000 9.91e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01724 K01802 - gmx:100792649 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01724 6 15730902 15733233 Vimu6g01724 6 15730902 15733233 ECH