Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01717 ATGACATCAGCCTGGACTCGTCCCCTCTCTCATCCTTCCCCGCCACCGCCAACCATACTCTCCGACTCTGATTCCGACGCAGACGGCCTTTCCTCCGGCACGGAGGCACACCGCCATTCCGACCTCTCCGACACCATATTCAAGCCATACCTCGAATTCTCCGGCCAATCCGGTGCCGACCTTTCGAAGATCCAATCATTCCTGACGTCCTCCTCCGCCGGTGCTCTCTCGTGCCTCATCTGCCTCGAACGGATCAAACCCTCGGACCCCACTTGGTCATGCTCCTCCCTCTGCTTTGCCGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGCCAGGCATCGGACCTCGCCGCCGCACGCGCTGCCACTCGCCTCCCCATCTCCGCCGCCACGGCCTCCGACACGGCCCTCTGGAATTGCCCCAAATGCAGATCGGAGTACCCCAAATCTCTCATTACCAAAATGTATCTCTGCTTCTGCGGGAAGGTGGAAAACCCTCCCAACGATCCGTGGGTTTTGCCACATTCTTGCGGTGAGGTTTGCGGAAGACCCTTGAAGCACAATTGCGGGCACCATTGCTTGTTACTCTGCCATCCCGGGCCGTGCCCTTCTTGCCCCAAACTCGTTAAAGTTAGATGCTTTTGCGGGAGCATTGAAGATGTTCGACGATGTGGATTCAAGGAATTTTCATGTAATAATCCGTGTTCCAAGGTTTTGGATTGTGGGGCTCACCGTTGCACCGAGGTTTGCCATCGTGGCGCTTGCCCTCCTTGCCGGACACGTGGCGTGTATGCCTGCCAGTGTGGGAAGGTGAAAGAGGAGAAGGAGTGTTGTGATCGTATTTTTCAGTGCGATCATCCGTGTGAGAAGAGGCTTAGCTGTGGGAAACATGTTTGTGAGAGAGGGTGTCATTCAGGGGAGTGTGGTGAGTGTCCCCTCAAGGGGAAGAGAACATGCCCTTGTGGGAAAAGGATTTATGAAGGAATGCCTTGTGATGCTTCTGTACAGCTTTGTGGGGCTACCTGTGATAAGATGTTACCCTGTGGTTACCACAGGTGCCCAGAGCGGTGCCACCGTGGACAGTGCGTTGAGACTTGTAGGGTTGTTGTGAAGAAGTCCTGTCGATGCGGGAGCCTCAAGAAAGATAGTAGGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGGATGCGTGACTGTGGTCGGCATGCTTGCAAGCGGCGCTGCTGTGATGGGGATTGCCCTCCCTGCTCAGAGATATGCGGAAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGTATGTCCTCGGTCAGTTTTTGGCTGAGATCGGGCCATCCCGACTGCCTTAAGGCTGAATCCTGTTATCTGCCTGCAACTATAAGCTCTTCTAAGTTCTTATCCATATGCTGCCACCGAGTTGAGTGGCGCGCAGCGCTGGCCAGCCCTCGAATGGCTGGGCTCTCTGACTTGCTGGCGCTTGACGCTGTAGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGCGTGTGGAGAGACACGATTTGAGTGGATTTTCTACCAGGTTCCTTGTGGTACGGAAATGGACCAAAAACCTCCTAGATGTCCCAAACCATGTCCTATCACTCCTTTATGTCGGCATGCATCAAATTGCAAGCCGCATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTACCTTGTGCCGAAGAGTATCAATGTGGCCATACATGCAAATTAAGGTGTCATGGTCCTAAGCCTCCTCCTAAACCAGAGTTTACTCTGAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGCCCTGAACTTGTGTGGAGATCATGTGTTGGACAACACATTGGAGCTGACAGAATGATGGTTTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGCAATCATTATTGTACAAAAACCTGTCATGCCTTGGATAGCCAATTACGAGGAAGTGAACCATGTGAAGATTGTTATCTTCGTTGCCAGAAGGAAAGAGAGCCTGCATGTCCACACAATTGCCCTCGGTCATGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAGCGGTCATGTCACTGTGGTGCAATGGTTCATGTGTTTGAGTGTATATATTACAATAGCTTGTCTGCAAAGGATCAAGAGACTGTCCGTTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGCACGCATCTATGCCCAGAGACATGCCATCCCGGTGAGTGCACAAATGCAGAGAAATGCTGTAAAAAGGTCACAGTTCGTTGCAAATGCCAAACACTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCGTATCATCTTATGGGTTGCCATCCAAGGGATACACCAAAAAATCAATTTGGAATTGGACTAATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTGCGTAAATCTAGGGTTGCTGAGGTACAAGATCAAGATGCAGAAAAATCAGTTCGAAAACGAAGAAAAAGGAGAGAACGTGTACTTGAATCCAAGGAAACATCAAAACTTCAGAAAATAATTTCCGGAGCGAAGCGGTTTCTTCTGTTTGTGTTTATATTGATCATTCTTGTTGCTGCTACATATTATTGGTACAAGGGACTTTTACGGCTCTCAGATTGGATGAATGAAGTGGATGAACAAAGACAAAGATATTCTCGAATCAAATGA 2820 0.4947 MTSAWTRPLSHPSPPPPTILSDSDSDADGLSSGTEAHRHSDLSDTIFKPYLEFSGQSGADLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISAATASDTALWNCPKCRSEYPKSLITKMYLCFCGKVENPPNDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGSIEDVRRCGFKEFSCNNPCSKVLDCGAHRCTEVCHRGACPPCRTRGVYACQCGKVKEEKECCDRIFQCDHPCEKRLSCGKHVCERGCHSGECGECPLKGKRTCPCGKRIYEGMPCDASVQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKDSRFLAIKIWHVKGSARGCVTVVGMLASGAAVMGIALPAQRYAEGGFDVRTINALLHAIGMSSVSFWLRSGHPDCLKAESCYLPATISSSKFLSICCHRVEWRAALASPRMAGLSDLLALDAVGPCAPCPIMVTISCACGETRFEWIFYQVPCGTEMDQKPPRCPKPCPITPLCRHASNCKPHKCHYGACHPCRLPCAEEYQCGHTCKLRCHGPKPPPKPEFTLKPKKKKIIQQSEGVPGTPCPPCPELVWRSCVGQHIGADRMMVCSDKSQFSCENLCGNPLPCGNHYCTKTCHALDSQLRGSEPCEDCYLRCQKEREPACPHNCPRSCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKDQETVRSCGGPCHRKLPNCTHLCPETCHPGECTNAEKCCKKVTVRCKCQTLKKEWVCQDVQAAYHLMGCHPRDTPKNQFGIGLIPCNSDCKSKVQVVESELQLRKSRVAEVQDQDAEKSVRKRRKRRERVLESKETSKLQKIISGAKRFLLFVFILIILVAATYYWYKGLLRLSDWMNEVDEQRQRYSRIK 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01717 939 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g01717 939 CDD RING-CH-C4HC3_NFXL1 76 145 - -
Vimu6g01717 939 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 504 594 IPR034078 GO:0003700
Vimu6g01717 939 CDD NF-X1-zinc-finger 706 733 - -
Vimu6g01717 939 Coils Coil 921 939 - -
Vimu6g01717 939 SMART znfxneu3 242 261 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 704 722 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 349 369 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 767 789 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 562 577 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 667 694 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 295 314 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 190 208 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 SMART znfxneu3 585 630 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 CDD NF-X1-zinc-finger 178 226 - -
Vimu6g01717 939 CDD NF-X1-zinc-finger 285 332 - -
Vimu6g01717 939 SUPERFAMILY RING/U-box 77 151 - -
Vimu6g01717 939 CDD NF-X1-zinc-finger 232 280 - -
Vimu6g01717 939 CDD NF-X1-zinc-finger 339 382 - -
Vimu6g01717 939 Pfam NF-X1 type zinc finger 190 207 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 Pfam NF-X1 type zinc finger 295 313 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 Pfam NF-X1 type zinc finger 349 368 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 Pfam NF-X1 type zinc finger 706 721 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 Pfam NF-X1 type zinc finger 585 594 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 Pfam NF-X1 type zinc finger 242 260 IPR000967 GO:0005634|GO:0008270
Vimu6g01717 939 Pfam NF-X1 type zinc finger 667 677 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01717 Vimu-Chr6 15697845 15706701 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vimu6g01717 zf-NF-X1 0.0037 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01717 K15683 - gmx:100799540 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01717 6 15697845 15706701 Vimu6g01717 6 15697845 15706701 ECH