Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01716 ATGATCACATCATTGGTGTTCTTCCAAAGTACATACTTTGACATGGCTGGTTACATGGGTGATGCAACAAGTTTTTGGGCGGCTGTGGACAGTCCCATAAGGAGTGAGACTGCCTCAAATTTGGGAGCATCCCCTCCCCATAGTTTTGCTTCGGTGGTGGACTATGCATTGAGAAGTAGTTGTGCTTCTGAAGCAGATTTTCGAACGTCCCGTGTCTCCAGTTTTGCTTCGGGAGTGGACTATGTGATCAGGAGTAGTAGTAGTACTGGAGGAACAGATTTAGAAACCTTCCCTGTGCCTGGTTTTGCTTCTGAGGTCTACTCCACCACTGTTGCTGAAGAGTCATCACCAGTGTTGTCCAATGCCACAGAACATGCTGTTAAAGGCTTACAATTATTCACCCAGGTTGAGCTTGCAGCAGCGACCAACAATTTCTCACTTAACAACAAGATTGGTGCTGGAAGGCTTGGTGTTGTGTACATAGGCAAACTCGTTGATGGTCGTGAGGTTGCAATCAAGAGGGTTGAAACCTGGCAAAAGAAAAAGATCTCATCAATTAAATCTGCACTGACCTTCTTGTCCCGTTTACACCACAAACACTTGGTTGGATTGGTTGGATTCTGTGAAGAGAAATACGAGAGGCTGTTGGTGTATGAGTACATGAAGAATGGTAACTTGTATGATCATTTGCATGAAAATGGTAGCAATGTGTTGAATCGGTGGAAAATGAGGATCACTATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAACTATGCAGATCCACTATTTATTCACGGGGACGTCAAGTCTTCCAACATTCTTCTTGATGCCACTTGGATGGCAAGAGTGTCTGATTTTAAATTGTCTTTGATGAGTCCAGAAGCTGAGCGTGATTACCGACGAATAAAGGTAGGAGGAACAGTTGGATACATTGATCCTGAGTACTATGATCTAAATATGTTGACAGCAAAGAGTGATGTGTATGGGCTGGGAGTTGTACTGCTAGAGCTTTTAACAGGAAAGAGAGCTATATTCCTTGATCGAGAAGATGGAGGTACCTTAAGTGTGCACGGTTTGGTGGACTTTGCAGTGCCTGCCATTTTGGCTGGAGAATTGGTCAACATTTTGGATCCTAGGGTCGGACCACCGGATGTGAATGAGATAGAGGCATTGGAGTTGGTGGCCCAAACAGCCCTCCATTGTGTGAATTGGAAAGGGAAAGATAGACCATCCATGGCTGATATTGTGATCAGTTTGGAGAGAGCATTGGCCATCTGTTACGTTGACGCAAGGAGTTTTAGTTGGGCAGTGGACAGTGCCATAGCGAGTGAGAGTGCGTCAGATATGGGAGAATCTCGTGTCCGCAGTTTTGCTTCGGTAGTGGACAGTGCCATAAGGAGTAGCAGTGCTACTGAAGCGGATTTTGAAACATCCCCCCCTATCAGTTGTTTTGCTTTTGCTTCTGCGGTGACCCAAAGAATTGTTGCTGCACGACTATCACAAGCAGTGTCGGATGGGATAGGATATGTTCATACACGATTATTCACCCTAGCTGAGCTTAAAGCGGCCACCAACAATTTCTCACTTCACAACAAGATTTTTGGTGCTGGAAGCATTAGTGTTGTGCACAGAGGTAAACTCTTTGATGGTCGTGAGGTGGCTATCAAAAGGGCTGAAACCAGTTCTAAGATGAAGGAGTTTCAAGAGTTATTTGGCTATTTATCCCTTTTGCCCTGCCTACACCATAATCACTTGGTTGGGCTAGTTGGATTCTGTAAAGAGAAAGATAAAAGGTTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTATATGATCATTTGCATGACAAAAAGAATGTGGACAAGGAGAGCAGTGTGTTGAATTCTTGGAGAATGAGGATCAAGATTGCTTTGGATGCTTCCCGGGGAATAGAACACCTTCATAAATATGTAGTTCCAACTATTATTTACAGAGATATCAAGTCTTCCAACATTCTTCTTGATGCTAATTGGACGGCAAGAGTATCTGGTTTTGAATCGTCGTGTTTCATGAGTCCAGAAGCTGAGCATGTTTACACGGATGTGCTTACCGCAAAGAGGGATGTGTACGGGCTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAGAAAACTACATTCAAGTATGGGACATATAGGTGCACACGTATGGTTAACATTGCACGACATGTTATTTTGGATGGGAAAATGGTGAACGTTTTGGATCCAAGGGTTGGAGCACCCCATGGAAATGAAGAAGCAGAGGCACTGGAATTAGTGGCCCATACAGCGGTCAATTGTGTAAATTTGAACAGGAAAGATAGGCCAACTGTGACTGAGGTAGTGGCCAATTTGGAGACAGCTTTATCACTTGCCACTACATCACCCTCTCGCCATCGCGTCACTCCCTCTGGCCATCGCACTCGCCGTCGACCATCATCTCGTAGCTGTCATTGCTCGTGTCGCCCTCGCGTCACTCTCTGGACAGAGCTCCCAAACGGAGCCATCGCCTACATCGGCGCTGATGGCACCACCTACGCCCTTCTGCTGGATCGCGTCGTCGCTGACTTCAGAAGTTTGGCGCAAGCAAGGACTGACAACAAATTAATGGTTATTGGGTCTCTTTCATTGGGCTAG 2664 0.4535 MITSLVFFQSTYFDMAGYMGDATSFWAAVDSPIRSETASNLGASPPHSFASVVDYALRSSCASEADFRTSRVSSFASGVDYVIRSSSSTGGTDLETFPVPGFASEVYSTTVAEESSPVLSNATEHAVKGLQLFTQVELAAATNNFSLNNKIGAGRLGVVYIGKLVDGREVAIKRVETWQKKKISSIKSALTFLSRLHHKHLVGLVGFCEEKYERLLVYEYMKNGNLYDHLHENGSNVLNRWKMRITIALDASRGIEYLHNYADPLFIHGDVKSSNILLDATWMARVSDFKLSLMSPEAERDYRRIKVGGTVGYIDPEYYDLNMLTAKSDVYGLGVVLLELLTGKRAIFLDREDGGTLSVHGLVDFAVPAILAGELVNILDPRVGPPDVNEIEALELVAQTALHCVNWKGKDRPSMADIVISLERALAICYVDARSFSWAVDSAIASESASDMGESRVRSFASVVDSAIRSSSATEADFETSPPISCFAFASAVTQRIVAARLSQAVSDGIGYVHTRLFTLAELKAATNNFSLHNKIFGAGSISVVHRGKLFDGREVAIKRAETSSKMKEFQELFGYLSLLPCLHHNHLVGLVGFCKEKDKRFLVYEYMKNGALYDHLHDKKNVDKESSVLNSWRMRIKIALDASRGIEHLHKYVVPTIIYRDIKSSNILLDANWTARVSGFESSCFMSPEAEHVYTDVLTAKRDVYGLGVVLLELLTGKKTTFKYGTYRCTRMVNIARHVILDGKMVNVLDPRVGAPHGNEEAEALELVAHTAVNCVNLNRKDRPTVTEVVANLETALSLATTSPSRHRVTPSGHRTRRRPSSRSCHCSCRPRVTLWTELPNGAIAYIGADGTTYALLLDRVVADFRSLAQARTDNKLMVIGSLSLG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01716 887 SMART serkin_6 530 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01716 887 SMART serkin_6 145 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01716 887 ProSiteProfiles Protein kinase domain profile. 531 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01716 887 Gene3D Transferase(Phosphotransferase) domain 1 608 810 - -
Vimu6g01716 887 Gene3D Transferase(Phosphotransferase) domain 1 221 433 - -
Vimu6g01716 887 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 221 433 - -
Vimu6g01716 887 MobiDBLite consensus disorder prediction 803 824 - -
Vimu6g01716 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vimu6g01716 887 SUPERFAMILY Protein kinase-like (PK-like) 510 794 IPR011009 -
Vimu6g01716 887 SUPERFAMILY Protein kinase-like (PK-like) 128 422 IPR011009 -
Vimu6g01716 887 Pfam Protein kinase domain 535 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01716 887 Pfam Protein kinase domain 146 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01716 887 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 102 435 IPR044815 GO:0004674
Vimu6g01716 887 ProSiteProfiles Protein kinase domain profile. 145 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01716 887 Gene3D Phosphorylase Kinase; domain 1 493 607 - -
Vimu6g01716 887 Gene3D Phosphorylase Kinase; domain 1 106 220 - -
Vimu6g01716 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01716 Vimu-Chr6 15692903 15696981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01716 518 804 Receptor kinase-like Gene Family AT3G55950 53.125 7.64e-86 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu6g01716 Pkinase 1.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01716 - - vra:106757051 699.893