Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01715 ATGGCGAATTCAGGAGCATCCCTTATGTTTGCTTCGATAGTGGAAAATGCTCTTAGGAGTATCGGAGGAGATTTGGGGGCATTTCCTTTGCACGATTTTTCTTTGGCAGTGGAGAATGCTTTGAGTAGTATTGGAGGAGATTTCGGAGCATTACCTGTTCATGGATTTGCTTCTATAGTGAACAATGCGATGACAAGTGTTGGAGGAGATTTGGGAGCATTGCCCGTGCATGGTTTTGCTTCGGCAGTGGAGAATGCGATGAGAAGTACTGGAGGAGATTTGGGAGCATTGCTCGTGCATGGTTTTGCTTCTGCAGTGGAGAATGCGATAAGAAGTACTGGAGGCGATTTTAGAGCATTACCCGAGCATGGTTTTGCTTCGACAGTGGAGAATGCCAATGGAGATTCGGGAATGTCTCATTCCCCTGTGCCTGATTTTCAATTATTCACCCTAGTTGAGCTTGCAGCAGCCACCGACAATTTCTCAGCGGGCAACAGGATTTGTGTTGGAAGCAATAGTGTTGTGTACATAGGCAAACTGGTTGATGGTAGTAAGGTTGCAATAGAAAGAGTAGAAACGGGGTTGAGTAGAACGCCTGAAGAGGACTTTTGGTGGAGGAGAATGTCTAGTTCGACCTTTTTGCCCGGTTTACGACCGAAGAACTTGGTTGGGCTGGTTGGGTTGTGTGTAGAGAAAGATGAAAGGGTGTTGGTGTACGAGTACATGAAAAATGGATCGTTGAATGATCATTTACATGAGAAGGGGATCAATGTGTTGAATTCGTGGGAAATAAGGATAAAAATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAAGTATGGAATTCCATATACTGTTCATGGAGATATCAAGCCTTCCAACATTCTTCTTGATGGTACCTGGACGGCAAAGTTGTGTAACTTTGGGAAGGTAGCAGGAAGCATTGGATACATTGATCCTGAGTACTCAACTCTTGGTGTGTTGACAGAAAAGAGTGATGTGTATGGATTTGGAGTTGTGGTGCTTGAACTTCTAACAGGAAAGAGAGCTGCATATGGGCAAAGTAGGAAAAATAGAAGCACCATATTACATGTACCCTTTGCAGAGGCTGCTATTTTGGGTGGAGATTTTGTGAAAATTTTGGATACAAGGATTGGAAAACCCTATCTCGGTGAAGCAGAGGCAGTGGAGTTAGTGGCTAATACTGCCATCAGTTGTGTAAATGTGGTAGGGAAGTTTAGACCAACCATTTCTCAAGTTGTGGTCAATTTGGAGAGGGCTTTTGCTTATTTCTTGTGCTAG 1308 0.4373 MANSGASLMFASIVENALRSIGGDLGAFPLHDFSLAVENALSSIGGDFGALPVHGFASIVNNAMTSVGGDLGALPVHGFASAVENAMRSTGGDLGALLVHGFASAVENAIRSTGGDFRALPEHGFASTVENANGDSGMSHSPVPDFQLFTLVELAAATDNFSAGNRICVGSNSVVYIGKLVDGSKVAIERVETGLSRTPEEDFWWRRMSSSTFLPGLRPKNLVGLVGLCVEKDERVLVYEYMKNGSLNDHLHEKGINVLNSWEIRIKIALDASRGIEYLHKYGIPYTVHGDIKPSNILLDGTWTAKLCNFGKVAGSIGYIDPEYSTLGVLTEKSDVYGFGVVVLELLTGKRAAYGQSRKNRSTILHVPFAEAAILGGDFVKILDTRIGKPYLGEAEAVELVANTAISCVNVVGKFRPTISQVVVNLERAFAYFLC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01715 435 SMART serkin_6 161 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01715 435 SUPERFAMILY Protein kinase-like (PK-like) 137 426 IPR011009 -
Vimu6g01715 435 ProSiteProfiles Protein kinase domain profile. 161 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01715 435 Pfam Protein kinase domain 165 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01715 435 Gene3D Transferase(Phosphotransferase) domain 1 242 432 - -
Vimu6g01715 435 Gene3D Phosphorylase Kinase; domain 1 127 241 - -
Vimu6g01715 435 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 137 431 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01715 Vimu-Chr6 15689708 15691015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01715 133 430 Receptor kinase-like Gene Family AT3G55950 48.624 6.28e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu6g01715 Pkinase 7.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01715 - - pvu:PHAVU_001G243700g 576.63