Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01714 ATGAAAACACCACCTTCCTCCTCCGTGCCCCTCTGTCTCGTCGTCGCCGTCCTGCTTATACTCTCTCTGCCACGCTCTTCTCATGGCCTCGGTTCCGGCGGTACCCTTGCCGTCTCTGACGCCTCCGCCACCGTGTGCGCCGTCGTGGCAGGCGAGTCCATTCGCCGCATTCAGTGTTACCGTCAGGGACAGAGCGTCTCCATCATTCCCAACGTTAGTTTTTCAATGATTTCGGGTGGGAGGAACTACTTCTGTGGTCTAAGGTCAAGTAACTCAGATTTACTTTGTTGGAACACAAGCTCTTCCTTCGAAAGGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTGGCCGTTGGGGATACCCACGTTTGCGCCACCGAGGTGGGTGGTGGTACGGTCAAGTGCTGGAGAACCGGTGACACGTTTCGGCTTCCTTCTGTGACTGATACATTCTCTTCAATCTCATCTGGGTCTGGCTTCTCTTGCGGAATTTTGAGGAATAATTCTCGGGTTCGGTGCTGGGGAGACACCGGCGTTTCGGATTTAACGGAACGGATCGAGAATGCATTTGGGAACATGTCCATGTTGAGTCTTGTTGCAGGTGGTTCACATGTTTGTGGATTGAACTCAACTGGGTTTGTGGCATGTGGCGGAAATAACGATTCTGGACAACTTGATTTTCCTCAAGGTGGGGCTTTTGAGTATTCTGCGGTGGCGCTTGGAGCCGAACATGGCTGTGCTATCAGAGGATTGAATGGTTCGGTTGTGTGTTGGGGTGGCAATGGGGGATTCTTGGGGACTAATGTTACGGATGGAGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAATTTTGTTTGTGGATTGACAACAAACAATTTGACAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATAGTTCGACGTTCGAGCTTCCTTTTCCACCTGTTCTTCCAGGGTCTTGTGTTCAATCTTCCTGTGGAGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCTGGCTCTGGTAACATTTGTAAACCAATGACTTGTAAGCCTCAAACAACAGCTCCACCGCCGCCATCACCGTCACCGCCTCCACCATCAATGTCACCGCCGCCACCATCACCACCACCGCCACCACCTTCGTCATCGCGATCAAAGACCTTGACAAACGGGTTATTGGCATTTGCTATTATCGGTTCTGTAGGAGCTTTTGCTGGAATATGCACTATAGTTTATTGCTTGTGGAGTGGAGTTTGTTTGGGGAAGAAGAAAGTTCACAATTCTGTGCAGCCTACAATCACAAGAGGTAGCAGTGGTTCAAACGGTGGGGGTGCTTCTAATAATAGCAATTCTTCAATATCGTCTATGATTATGCGTCAGACTTCAATAATAATGAGACGCCAGAGGAGTGGAACGTCATCAACGAAGCACCCAGACAGGGCTGAGGAGTTCACCCTGGCAGAGCTTGTGGCAGCCACCGACAATTTCTCGCCAGAAAACAAGATCGGAGCTGGAAGCTTTGGTGTTGTGTACAAAGGCAAACTCGCGGATGGACGCGAGGTGGCAATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGAAGTTTCAAGAGAAGGAAAGTGCATTCGAGTCTGAATTGGCCTTCTTGTCTCGCCTACACCACAAGCACTTGGTTGGACTGGTTGGGTTCTGCGAAGAGAAAGACGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGCTGTATGATCATTTGCATGACAAGAACAACGTGGAGAAGGGTAACAGTGTGTTGAATTATTGGAAAATGAGGATAAAAATTGCTTTGGATGCTGCCCGGGGAATAGAGTATCTTCATAATTATGCAGTTCCATCAATTATTCACAGAGACATAAAGTCTTCTAACATTCTTATTGATGGTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTATGATGAGTCCAGAACCCGACCGTGATCAGCGACCAATGAAGGCAGCAGGAACCATTGGATACATTGATCCGGAGTACTACGGTTTAAATGTATTGACGGCAAAGAGTGATGTGTATGGGCTGGGAGTTGTACTGCTGGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGGGAAGATGGAGGCAGCCCACTAAGTGTGGTGGACTTTGCAGTGCCTCGTATTTTGGCTGGAGAATTGGTGAAAATTTTGGATGCAAGGGTTGGACCACCCGATGTGAATGAGGCAGAGGCAGTGGAATTAGTAGCCTATACAGCTATCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTAGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATGATACCATTTCCAGTGGCTCTATCTCTGTTAAGTTGAGTCTGCAGAGGGACATTATGATAAATCCCTTTCACGGTCCCCAGGCCCAGAGAAACACTCAATATGTTGGTTTTTGGTGGAAGCAGTTGGTCTCAAGAACCATGAACGAGGAAACTGGTCGAAGGTTACCCTTGTCTTGCCTCGCACCTTCTCAACAAATTCGCCCTGCCTCACTCACTGTCAGTGTTTCAGAAAAGAAAAAGTGA 2631 0.4774 MKTPPSSSVPLCLVVAVLLILSLPRSSHGLGSGGTLAVSDASATVCAVVAGESIRRIQCYRQGQSVSIIPNVSFSMISGGRNYFCGLRSSNSDLLCWNTSSSFERRRLYNDSSVPLENLAVGDTHVCATEVGGGTVKCWRTGDTFRLPSVTDTFSSISSGSGFSCGILRNNSRVRCWGDTGVSDLTERIENAFGNMSMLSLVAGGSHVCGLNSTGFVACGGNNDSGQLDFPQGGAFEYSAVALGAEHGCAIRGLNGSVVCWGGNGGFLGTNVTDGVSFEVIVSGSNFVCGLTTNNLTVVCWGPGWSNSSTFELPFPPVLPGSCVQSSCGECGSYLDSQSLCSGSGNICKPMTCKPQTTAPPPPSPSPPPPSMSPPPPSPPPPPPSSSRSKTLTNGLLAFAIIGSVGAFAGICTIVYCLWSGVCLGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSISSMIMRQTSIIMRRQRSGTSSTKHPDRAEEFTLAELVAATDNFSPENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGNSVLNYWKMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILIDGTWTARVSDFGLSMMSPEPDRDQRPMKAAGTIGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGSPLSVVDFAVPRILAGELVKILDARVGPPDVNEAEAVELVAYTAIHCVNLEGKDRPTMADIVVNLERALAICESSHDTISSGSISVKLSLQRDIMINPFHGPQAQRNTQYVGFWWKQLVSRTMNEETGRRLPLSCLAPSQQIRPASLTVSVSEKKK 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01714 876 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 195 801 IPR044815 GO:0004674
Vimu6g01714 876 Gene3D - 62 358 IPR009091 -
Vimu6g01714 876 ProSiteProfiles Protein kinase domain profile. 500 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01714 876 MobiDBLite consensus disorder prediction 355 390 - -
Vimu6g01714 876 SUPERFAMILY Protein kinase-like (PK-like) 477 785 IPR011009 -
Vimu6g01714 876 SMART serkin_6 500 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01714 876 Pfam Protein kinase domain 502 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01714 876 Gene3D Phosphorylase Kinase; domain 1 460 580 - -
Vimu6g01714 876 FunFam serine/threonine-protein kinase-like protein CCR1 469 580 - -
Vimu6g01714 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vimu6g01714 876 MobiDBLite consensus disorder prediction 436 456 - -
Vimu6g01714 876 SUPERFAMILY RCC1/BLIP-II 67 307 IPR009091 -
Vimu6g01714 876 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vimu6g01714 876 MobiDBLite consensus disorder prediction 355 387 - -
Vimu6g01714 876 Gene3D Transferase(Phosphotransferase) domain 1 581 803 - -
Vimu6g01714 876 FunFam Serine/threonine-protein kinase-like protein CCR4 581 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01714 Vimu-Chr6 15685283 15689219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01714 8 806 Receptor kinase-like Gene Family AT3G55950 59.341 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu6g01714 Pkinase 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01714 - - vra:106757659 1478.77