Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu6g01709 | TTGTGGTATAGTAAGCTTCAGAGTGATGCCTTGCGAGAAGCCATCACCGGAATCATGGCCGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAGATTGGGCTGAAAAACTATGATCCACAGAAGGACAAACGTTTCAGTGGCTCTGTCAAGTTGCCCCACATTCCTCGTCCCAAGATGAAGATATGCATGCTTGGTGATGCACAACATGTCGAAGAGGCCGAGAAGATAGGACTGGACTGGATGGATGTCGAAGCATTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTAGCTAAAAAGTACCATGCCTTTTTAGCTTCTGAAGCAGTTATTAAGCAGATTCCACGTCTGTTGGGTCCTGGAAAATTCCCTACACTTGTTACTCATCAGGAAACTCTCGAGTCAAAGGTAAACGAGTCTAAGGCTATGGTCAAATTTCAACTCAAGAAAGTGCTGTGCATGGGAGTAGCCGTGGGCAATGTCAGTATGGAGGAAAAACAAATCTTCCAAAATGTTCAACTGAGTGTTAACTTCCTGGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCTTACCGTGTCTTTTAG | 612 | 0.4379 | MWYSKLQSDALREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVRCLYLKSTMGKSYRVF | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu6g01709 | 203 | Gene3D | - | 3 | 121 | - | - | |
| Vimu6g01709 | 203 | Gene3D | - | 133 | 201 | - | - | |
| Vimu6g01709 | 203 | FunFam | Ribosomal protein | 67 | 151 | - | - | |
| Vimu6g01709 | 203 | PIRSF | RPL1p_RPL1a_RPL10e_RPL1o | 3 | 203 | IPR002143 | GO:0003723|GO:0003735|GO:0006412|GO:0015934 | |
| Vimu6g01709 | 203 | SUPERFAMILY | Ribosomal protein L1 | 5 | 203 | IPR023674 | - | |
| Vimu6g01709 | 203 | CDD | Ribosomal_L1 | 11 | 202 | IPR028364 | - | |
| Vimu6g01709 | 203 | PANTHER | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 13 | 197 | - | - | |
| Vimu6g01709 | 203 | Pfam | Ribosomal protein L1p/L10e family | 24 | 189 | IPR028364 | - | |
| Vimu6g01709 | 203 | FunFam | Ribosomal protein L10a | 3 | 121 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu6g01709 | Vimu-Chr6 | 15630913 | 15633013 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu6g01709 | 4 | 203 | Cytoplasmic Ribosomal Protein Gene Family | AT1G08360 | 81.395 | 6.65e-110 | 311 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu6g01709 | K02865 | - | gmx:100808580 | 357.836 |