Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01706 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCAATGTGACTATGGAAAACTACTATGATTCTGGCTGGCACATGAGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTTGCAGTTCCTACACAAATACTTCCTCATGTCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCTGAAGAAGAGAGAGCAATGAGTGCTTCCAAGAGCCACAGCCAAGCTGAGAAAAGGCGTAGAGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAATCCGATAAGGTCGAAAAAAGAATATTGAACAGAGCCTACTTATACAGAGGGAAACATGTGTTGCCAAACATGCTAATATTAACATTTGGGTACTTGCAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCATGTCAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTGTGACCATGTAGAAGATGAAAGCTGCACTAAAGTGAACAAATTGAAGGAGAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAGGGCTTGAGACTGACGGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGCCGGATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATAGCTTCATCATCCATGACATCTAATTGCCCCACCAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCGTTGCCTACAGTAA 909 0.4334 MGDKRLRNHGRNFRMVSNVTMENYYDSGWHMSTSWAQCSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAEEERAMSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKVEKRILNRAYLYRGKHVLPNMLILTFGYLQMDKAALLGSVIDHVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVEDESCTKVNKLKENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSRCLQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01706 302 Gene3D - 77 171 IPR036638 GO:0046983
Vimu6g01706 302 Pfam Helix-loop-helix DNA-binding domain 86 124 IPR011598 GO:0046983
Vimu6g01706 302 MobiDBLite consensus disorder prediction 77 96 - -
Vimu6g01706 302 SMART finulus 89 168 IPR011598 GO:0046983
Vimu6g01706 302 MobiDBLite consensus disorder prediction 79 96 - -
Vimu6g01706 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 165 IPR036638 GO:0046983
Vimu6g01706 302 PANTHER TRANSCRIPTION FACTOR BHLH30 74 296 IPR045847 GO:0003700|GO:0006355
Vimu6g01706 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01706 Vimu-Chr6 15604911 15606025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01706 21 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 37.755 8.59e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g01706 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01706 - - gmx:100799687 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01706 6 15604911 15606025 Vimu6g01706 6 15604911 15606025 ECH
Vimu6g01706 6 15604911 15606025 Vimu1g00890 1 6092687 6094048 PCT