Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01704 ATGGCCAGCCCAGATACACGACCATTCACTTGGCACTACACAGAAATCGATGACAGAGACCTCGAGATCCGAGGAAGGACTTTGTTCTTCGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTCATATACACGCGCTGGGTTTGTCGCTACCAGGGGCTCCTTCCCACCACTGCGTTTTCCGCCGCTACCCACGCGCCGTCACTCCCGCAGTCGCAGGGACTGGACCCCGCAACCCTCAAGAAACTGCCCATAATCCTTCACCACGCGCCCTCGGATCGCGACGAAAGCTCGTGGGACGAAACGGAGTGTTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGCGACCATTATTTTCATTGTGAATGTGTTGATAGGTGGCTCACTCACCACTCAAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCTTTCCCAAAGATTTTGATTCAGGAACCACCTCTCAGAATTGATTTTCAGTTCTAG 525 0.5276 MASPDTRPFTWHYTEIDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGLLPTTAFSAATHAPSLPQSQGLDPATLKKLPIILHHAPSDRDESSWDETECCICLGEFRDGEKVKVLPACDHYFHCECVDRWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01704 174 CDD RING-H2_EL5-like 106 149 - -
Vimu6g01704 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 155 IPR013083 -
Vimu6g01704 174 Pfam Ring finger domain 106 149 IPR001841 -
Vimu6g01704 174 SUPERFAMILY RING/U-box 98 155 - -
Vimu6g01704 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Vimu6g01704 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vimu6g01704 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 156 - -
Vimu6g01704 174 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01704 Vimu-Chr6 15595953 15598670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01704 11 157 C3H Transcription Factor Family AT3G11110 44.000 1.00e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01704 - - gmx:100803278 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01704 6 15595953 15598670 Vimu1g00888 1 6060368 6060877 PCT