Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01702 ATGCGCCCAGAATCTTCACACAAATCTTTCAAAGTTACACTCACTCATCAGCCGCACACAACAAATAAATACCACCCTCTCCTAACATATGCTTCAAACTTCAAACTACCTATTTCTCAGTTGCCAAAAATGGTGCGTGTCAAAGAAGCTCATGTTGTCACACCCTCAGACCCCACACCCAACACTGTCCTTCCACTCTCAGCACTCGACTCCCAACTCTTCTTGCGCTTCACAATCGAGTATCTCCTTCTTTACAGGCCCGCCCCGGGCCTCGACCGCCCTTCAACCGCCGCTCGTTTAAAAACCGCATTAGCTAAAGCCCTTGTTCCTTATTATCCATTTGCTGGAAGAGTCCGGCCCCAGCCCCAGGGGCTGGGCCTCGAGGTCGTTTGTCGGGCCCAGGGTGCTGTCTTCATCGAAGCCTCTTCCGAACGCTACAGTGTCAATGATTTCCAAAAGGCTCCCAAAACAGTGGCCCAATGGAGAAAGCTCTTATCCCTCTACGTCACTGACGTCCTCAAAGGCTCGCCGATTCTCGTCGTCCAACTCACCTGGCTCGCCGACGGAGCCGCCGCCGTCGGCGTCGGAATCAACCACTGCATCTGCGACGGCATCGGGAGCGCTGAGTTTCTGAATTATTTCTCCGATTTAGCCTCGGAGAAATGTCAGGGTCTGGGTCTCGGTGTGAGTGTGGATCCGAAGCCGAAACCGGTTTGGGATAGACATCTTCTGAATCCGGATAAGAGAAGCGAGGCGAATCCAGCTATGCATGCTGAGTTTTGTGGAGTTCCTGATTTGTGCGGGTTTATGAACCGTGTGACGAGCAGGCTGAAGCCTACTTGCATTGTGTTGGACGAGAGACGCATCGAGGCGCTGAAGCGCGCGTGCGGAGGAGAGTCGTGCACGTCCTTCGAGGTAGTGGCCGCGCACGTCTGGAGGAGCTGGGCTCGGGCGTTAGGGTTTCCGAAGAACCAGACGCTGAAGCTTTTGTTCAGCGTGAACGTGCGGAAGCGCTTGAAGCCGGGTTTGCCGGAGGGGTACTACGGGAACGCGTTTGTGTTGGGGTGCGCGCAGAGCAGCGCGTGGGAGTTGGGGGAGAGAGGGGTGGCTCATGTGTGGAGTGCGGTGAAGCGTGCGAAAGAGAGGGTGGATAGCGAGCACGTGCGGAGGGTTGTTGAGTTGGTTTCCGAGTCAAGGGCGAGTCCTGACTCGGTGGGGGTGCTGATTCTGTCGCAGTGGTCGAGGCTGGGTTTGGAGAGGGTTGAACTAGGAATGGGAAAGCCTCTGCATGTGGGACCCATTTGCTGCGATAGGTATTGTTTGTTTCTTCCGGTTACCGGTGAACGCCATAGCGTGAAGGTGATGGTGGCCGTCCCCACCGCCGCCGTTGACAATTTCCATCGCTTCCTCCGGGAATACAATTCATGA 1428 0.5546 MRPESSHKSFKVTLTHQPHTTNKYHPLLTYASNFKLPISQLPKMVRVKEAHVVTPSDPTPNTVLPLSALDSQLFLRFTIEYLLLYRPAPGLDRPSTAARLKTALAKALVPYYPFAGRVRPQPQGLGLEVVCRAQGAVFIEASSERYSVNDFQKAPKTVAQWRKLLSLYVTDVLKGSPILVVQLTWLADGAAAVGVGINHCICDGIGSAEFLNYFSDLASEKCQGLGLGVSVDPKPKPVWDRHLLNPDKRSEANPAMHAEFCGVPDLCGFMNRVTSRLKPTCIVLDERRIEALKRACGGESCTSFEVVAAHVWRSWARALGFPKNQTLKLLFSVNVRKRLKPGLPEGYYGNAFVLGCAQSSAWELGERGVAHVWSAVKRAKERVDSEHVRRVVELVSESRASPDSVGVLILSQWSRLGLERVELGMGKPLHVGPICCDRYCLFLPVTGERHSVKVMVAVPTAAVDNFHRFLREYNS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01702 475 Gene3D - 271 472 IPR023213 -
Vimu6g01702 475 Gene3D - 43 261 IPR023213 -
Vimu6g01702 475 PANTHER ACYL TRANSFERASE 4 45 470 - -
Vimu6g01702 475 Pfam Transferase family 44 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01702 Vimu-Chr6 15577346 15579687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01702 45 472 Monolignol Biosynthesis Gene Families AT5G48930 27.840 9.95e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01702 - - pvu:PHAVU_001G244800g 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01702 6 15577346 15579687 Vimu1g00884 1 6030427 6031746 PCT