Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01697 ATGAACAAAAACTGGAAACCCAGCTGCTTCAGGGACCCTCTGTTCCTTCTAGCGTTCTGTTTGTTGTTTCAGAACTTTAGTTACGGTTGCTCTTTGAATGAAGAAGGTAAAGCTCTTCTGAAGTTCAAGCAGGGAATAGTAAGAGACCCTTTTGGTGCTTTGTCAAATTGGGTCAACGATGAAGTAGCAGTTAACCATTGTAATTGGTTTGGAGTTGAGTGCTCTGCTGGAAGAGTGGTAGTCTTGAATTTGAAAGACCTTTGTCTTGAAGGAAATCTGGTACCTGAGCTCGCGAACCTTGTTCACATAAAGTCCATAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGGTTTTGCAAACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACATCTACCTACAGATCTTGGGAATAATATTTCGCTAACAATCCTTTTGTTGGACAACAATGAACATCTCTGTGGTTTCTCTCCTGAAATTAATAAATTGATGTTGATCTCTGAATATCAAGTAGATGAAAGACAACTGAGTCTGGCAGCAAAAGTGCCAGCTTGTACAAGAAGATTCATCAAACGGCACATTGGCAAAAATAAGAAAGGTTTAAGGAGGCTACTGCAATCTTTTCGTGATAGTCCTTTTAACCGTGCTGCTAATTTTCCTGACAGTCCTCCACCATCTTCTTCAGCTCCCTCACTGGCCCCAGCAACACAGCCACCGGTTGAGGAACCAACTTTCACTGACCGAAATGATTCTACTTCTCCTTCTCCTTCTCTGCCTGAACCGCGCTCTGAACCACCATCTACAAGTGGCTCATCAGATAGCAATCTTGTTGCTATTTTGGCTGGAGTTATAGGTGGTGTTGTATTTCTTGTCATTTCAATCATTGGCATATATCTCTGCAAAACAAACAAGGTAGCTACAGTAAAACCTTGGGCGACAGGATTAAGTGGACAGCTTCAGAAGGCATTCATAACAGGTGTGCCAAAGCTGAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGCACTTCTTCCATTGGTACAGTGTACAAAGGGACTTTGTCCACTGGTGTTGAAATAGCCGTGGCCTCTGTTGCAGCGACATCATCAAAAGATTGGTCAAAGACTTTAGAAGCCCAATTTAGGAAGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGACGAGCCTTTCACCAGAATGGTGGTTTTTGAGTACGCCCCAAATGGAACACTCTTTGAGCATTTGCACATAAAAGAAGCCGAGCACTTGGATTGGGAAACAAGACTCAGAGTTGCCATGGGCATGGCTTACTGCCTACAACATGTGCACCAGTTGGAGCCTCCTTTGGTTATTGGCAACCTGAATTCTTCAGCGGTTCAACTCACGGATGATTGTGCTGCCAAAATCTCTGATTTGAGTTTCTTAACTGAAATAGCTTCAGCTGTGATGAAATCTTCTGCTAGACAACACCCTGACATGACCCCAGCAAGTAACATTTACAGTTTTGGTGTTATACTATTTGAAATGGTGTCAGGCAGGCTCCCTTATTCAGTGGACAATGATGGCTCACTTGATGACTGGGCTTCACAATATTTACATGGGGATCAGCCCCTCAAAGAAATAGTGGATCCATCTCTGGCGTCCTTCCAACAAGAACAGCTGGAACAAGTTGATGCTTTGATCAAATCTTGTGTCCACCCTGATCCAAAGCAAAGACCAACTATGAAAGAAATTTGTCTGAGATTAAGAGAGATAACAAAAATAACACCCGAGGCAGCTGTTCCAAAACTTTCTCCACTTTGGTGGGCGGAGCTTGAGATTGCCTCGGTAAATGGAAACTGA 1920 0.4229 MNKNWKPSCFRDPLFLLAFCLLFQNFSYGCSLNEEGKALLKFKQGIVRDPFGALSNWVNDEVAVNHCNWFGVECSAGRVVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGFANLNELEVLDLGYNNFSGHLPTDLGNNISLTILLLDNNEHLCGFSPEINKLMLISEYQVDERQLSLAAKVPACTRRFIKRHIGKNKKGLRRLLQSFRDSPFNRAANFPDSPPPSSSAPSLAPATQPPVEEPTFTDRNDSTSPSPSLPEPRSEPPSTSGSSDSNLVAILAGVIGGVVFLVISIIGIYLCKTNKVATVKPWATGLSGQLQKAFITGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSTGVEIAVASVAATSSKDWSKTLEAQFRKKIDTLSKVNHKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWETRLRVAMGMAYCLQHVHQLEPPLVIGNLNSSAVQLTDDCAAKISDLSFLTEIASAVMKSSARQHPDMTPASNIYSFGVILFEMVSGRLPYSVDNDGSLDDWASQYLHGDQPLKEIVDPSLASFQQEQLEQVDALIKSCVHPDPKQRPTMKEICLRLREITKITPEAAVPKLSPLWWAELEIASVNGN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01697 639 Pfam Protein tyrosine and serine/threonine kinase 351 606 IPR001245 GO:0004672|GO:0006468
Vimu6g01697 639 SUPERFAMILY Protein kinase-like (PK-like) 332 608 IPR011009 -
Vimu6g01697 639 FunFam Nuclear pore complex protein NUP107 32 192 - -
Vimu6g01697 639 Gene3D Transferase(Phosphotransferase) domain 1 432 620 - -
Vimu6g01697 639 MobiDBLite consensus disorder prediction 224 281 - -
Vimu6g01697 639 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Vimu6g01697 639 ProSiteProfiles Protein kinase domain profile. 349 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01697 639 MobiDBLite consensus disorder prediction 251 266 - -
Vimu6g01697 639 Pfam Leucine rich repeat 102 159 IPR001611 GO:0005515
Vimu6g01697 639 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Vimu6g01697 639 PANTHER PROTEIN MALE DISCOVERER 2 14 636 - -
Vimu6g01697 639 Gene3D Ribonuclease Inhibitor 31 208 IPR032675 -
Vimu6g01697 639 SUPERFAMILY L domain-like 36 166 - -
Vimu6g01697 639 Gene3D Phosphorylase Kinase; domain 1 321 431 - -
Vimu6g01697 639 FunFam Inactive receptor-like serine/threonine-protein kinase 323 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01697 Vimu-Chr6 15545074 15549809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01697 9 608 Receptor kinase-like Gene Family AT5G16000 25.240 6.96e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu6g01697 PK_Tyr_Ser-Thr 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01697 - - gmx:100784541 1006.13