Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01691 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTTCTCAGACGCAGATGTACCAAGGACTGCATCTTTGCTCCTTATTTTCCTTCCAATGACCCTCAAAAGTTCGCCCTAGTGCACAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCCATTGAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTACGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGCTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACATGAGCCAGTGATGCCAAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTGAGTTTCTCAACTATGCCTCTTCAAGCAATGTAATTTATGATGCTGTCTCAAGAGACAACATTTATGGACATGATATGGTTTCCTAA 498 0.4498 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIEQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVMPNPEMENPDQKSYLLQNELPEFLNYASSSNVIYDAVSRDNIYGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01691 165 Coils Coil 85 105 - -
Vimu6g01691 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vimu6g01691 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vimu6g01691 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01691 Vimu-Chr6 15507685 15508425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01691 3 117 AS2 family AT2G30130 86.957 1.61e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g01691 LOB 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01691 - - gmx:121173085 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01691 6 15507685 15508425 Vimu1g00867 1 5903732 5904443 ECH
Vimu6g01691 6 15507685 15508425 Vimu6g01691 6 15507685 15508425 ECH
Vimu6g01691 6 15507685 15508425 Vimu1g00867 1 5903732 5904443 PCT