Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01689 ATGGATTCCGACTTCCCGAACAAGGCGTTGACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCTACCCCGTTCTCCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTCAAAGACGTTGCAGTTGACGCCGCCACCGGTTCCGGAAAAACCCTGGCCTTTGTCGTCCCTCTCGTTGAGATTCTGCTCCGGTCCTGCTCTCACCCCAAGCCTCACCAGGTGCTAGGGATAATTATATCTCCTACAAGGGAGCTTTCAATCCAAATATATAATGTTGCACAACCATTCATTTCGACATTGGAGAATGTTAAGTCCACGCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACACAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGCGGTTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACTTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCCTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCAATTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCAGGACTGAGAAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCTTGTGTCTTCAAAACAGCCAGAATCTTCAAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACCTGTGCTTGCGTTGATTATTGGGGAACTGTCCTTCCTTGTCTTTCTGTTTTAAAAGGTTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTTCAAGGGAGAAAGCACTAGCTACATTTACATCCCTGTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCGCGAGGACTAGACATACCAGGCGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGAAAACAGGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATCCCTCTCCATGAGAGAATATGTTCTGATGGTGCATTGGATGTTGTTCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGTGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGGATAAATCACGGGAGAAACAAAGAAAGAAGAACCTACAAGCAAAGAAAGAAGCCAAAGAGAAAGAACCAAAACCTCAAAAACCAAAGAAAACCCCAGATGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATAGAAGACGAAGAGGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1653 0.4338 MDSDFPNKALTSTRFSDLNPPLSYPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILLRSCSHPKPHQVLGIIISPTRELSIQIYNVAQPFISTLENVKSTLLVGGAEVKADTKKIEEEGANILIGTPGRLYDIMNRMDVLDFKNFEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDLVSSKQPESSKTPSGLHIEYLECEEDKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGTVLPCLSVLKGFSLIPLHGKMKQSSREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLHERICSDGALDVVPQIRSAAKKDRDIMEKGIKAFVSYIRGKNLKLANWPWDMAYYNFLQCQRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPDAVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01689 550 PANTHER RNA HELICASE 12 484 - -
Vimu6g01689 550 Gene3D - 3 227 IPR027417 -
Vimu6g01689 550 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Vimu6g01689 550 FunFam RNA helicase 9 227 - -
Vimu6g01689 550 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Vimu6g01689 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Vimu6g01689 550 MobiDBLite consensus disorder prediction 468 516 - -
Vimu6g01689 550 Coils Coil 466 486 - -
Vimu6g01689 550 CDD DEADc_DDX55 26 224 - -
Vimu6g01689 550 SMART helicmild6 293 375 IPR001650 -
Vimu6g01689 550 Gene3D - 253 545 IPR027417 -
Vimu6g01689 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Vimu6g01689 550 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Vimu6g01689 550 CDD SF2_C_DEAD 254 384 - -
Vimu6g01689 550 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Vimu6g01689 550 Coils Coil 500 527 - -
Vimu6g01689 550 SMART ultradead3 34 254 IPR014001 -
Vimu6g01689 550 MobiDBLite consensus disorder prediction 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01689 Vimu-Chr6 15481584 15486085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01689 22 414 Eukaryotic Initiation Factors Gene Family AT3G13920 29.442 3.96e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01689 K14809 - gmx:100801482 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01689 6 15481584 15486085 Vimu6g01689 6 15481584 15486085 ECH