Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01681 ATGGTAGCGGAGAAAACCAACATTACCTCTTGTCAGTTTTCTCAACATCAAGTAGGAAATGCAGACCATGTTTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCATCCAAGGCGCACACCAGCCCGTGTTCTTTTTTCTTTCTCTTCTGGGTCTGGACTCTTGTTCTCTCCACCTGTTTGAAATCGGTTTTGTGCGAAGATGAGGGTTGGGATGGCGTGGTTGTGACGGCATCAAACTTCTTAGCACTTCAAGCGTTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCTTGCGGAGCTGGAATGATAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCTAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGACTGAGAGGGCGTATCACTGATAAAATTGGGCAGCTTCAAGGTCTCAGAAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTTACAGGTTCCATCCCTTCTTCTTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATCCCTTATAGTCTTGCCAATTCCACCAAACTTTATTGGCTTAACTTGAGTTTTAACTCCTTCTCTGGTCCTTTACCAGCTAGCTTAACTCACTCACTTTCCCTCACATTCCTTTCTCTTCAACATAATAATCTATCTGGTCGCCTTCCTAACTCTTGGGGTGGGAGTTCTAAGAATGACGAGTTCTTTAGGCTTCGAAATTTGCTCCTAGATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTGGCTTAAGAGAACTCAATGAAATCTCCCTTAGTAATAATAGGTTTACTGGAGCTGTACCGAATGAAATAGGATCTCTTTCTAGACTCAAGACACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACTCTCTCTAATTTATCCTCGCTTACATTGCTGAATGTTGAGAACAACCTCCTAGAAAATCCAATCCCTGGAACTTTAGGGAGTTTGCACAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTAGTGGGCATATTCCTTCTAGCATTGCAAACATTTCCACTCTTAAGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAAAGTAGTCTTGATCTCTTCAATGTTTCTTATAATAGCCTCTCAGGCTCTGTTCCCCCTCAACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGGTACAGCCCCTCAACACCATGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCACCACCTCATGAAATGTCAAAACACCACCAGCATAGGAAGCTGAGTACCAAAGACATTATTCTCATAGTAGCAGGAGTTCTTCTCATAGTCCTGATCGTACTTTGTTGCATCCTTCTGTTCTGTCTGATCAGAAAGAGATCAACATCAATGGCCGAGAATGGCAGAGGTGTAGGGAGAACTGGAGCTACGAGGGCAGAAAAAGGAATCCCTCCTGTTGCTACTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTGCATTTTGATGGACCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATACTGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTGAAGAGATTGAGGGAAAAGATCGCTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTGGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCCAAAGGAAGTGTTGCTTCTTTCCTACACGGTAATGGAACTGAAACGTCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTCCATTCCCAGGAGAATATTATACATGGAAACCTCACATCTAGTAATGTATTGCTTGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACAGCTGGAGCATTGGGATACCGCGCACCCGAGCTCTCCAAGCTCAAGAAAGCCAACTCTAAAACTGATATCTATAGCCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAACGGAGTAGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGCGGAATTAATGAGAGACTCTTCAACAGTTGGCGATGAGTTGCTAAACACATTGAAGCTCGCTTTACACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTACAGCAGCTGGAAGAGATTAGACCAGAGAGATCAGTCACACCCAGTTCTGGGGATGATTCTATAATATAG 2583 0.4355 MVAEKTNITSCQFSQHQVGNADHVSDKKKERWKKTPSKAHTSPCSFFFLFWVWTLVLSTCLKSVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLSNNLLTGAIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSLSLTFLSLQHNNLSGRLPNSWGGSSKNDEFFRLRNLLLDHNFFTGNVPSSLGGLRELNEISLSNNRFTGAVPNEIGSLSRLKTLDISNNALNGSLPATLSNLSSLTLLNVENNLLENPIPGTLGSLHNLSVLILSRNQFSGHIPSSIANISTLKQLDLSLNNLSGEIPVSFNSQSSLDLFNVSYNSLSGSVPPQLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHQHRKLSTKDIILIVAGVLLIVLIVLCCILLFCLIRKRSTSMAENGRGVGRTGATRAEKGIPPVATGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEILGKSTYGTVYKAILEDGSQVAVKRLREKIAKGQREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGNGTETSIDWQTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDAELMRDSSTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTPSSGDDSII 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01681 860 MobiDBLite consensus disorder prediction 19 39 - -
Vimu6g01681 860 Gene3D Transferase(Phosphotransferase) domain 1 651 857 - -
Vimu6g01681 860 Gene3D Ribonuclease Inhibitor 335 461 IPR032675 -
Vimu6g01681 860 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 77 261 - -
Vimu6g01681 860 Gene3D Ribonuclease Inhibitor 80 235 IPR032675 -
Vimu6g01681 860 SMART LRR_typ_2 366 389 IPR003591 -
Vimu6g01681 860 SMART LRR_typ_2 144 167 IPR003591 -
Vimu6g01681 860 SMART LRR_typ_2 318 341 IPR003591 -
Vimu6g01681 860 SMART LRR_typ_2 342 365 IPR003591 -
Vimu6g01681 860 SMART LRR_typ_2 168 192 IPR003591 -
Vimu6g01681 860 SMART LRR_typ_2 294 317 IPR003591 -
Vimu6g01681 860 FunFam Pollen receptor-like kinase 1 650 854 - -
Vimu6g01681 860 CDD STKc_IRAK 579 844 - -
Vimu6g01681 860 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 264 463 - -
Vimu6g01681 860 Pfam Protein tyrosine and serine/threonine kinase 576 841 IPR001245 GO:0004672|GO:0006468
Vimu6g01681 860 PRINTS Leucine-rich repeat signature 318 331 - -
Vimu6g01681 860 PRINTS Leucine-rich repeat signature 195 208 - -
Vimu6g01681 860 Pfam Leucine rich repeat 272 331 IPR001611 GO:0005515
Vimu6g01681 860 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Vimu6g01681 860 ProSiteProfiles Protein kinase domain profile. 573 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01681 860 Gene3D Phosphorylase Kinase; domain 1 579 650 - -
Vimu6g01681 860 Gene3D Ribonuclease Inhibitor 236 334 IPR032675 -
Vimu6g01681 860 MobiDBLite consensus disorder prediction 523 545 - -
Vimu6g01681 860 Pfam Leucine rich repeat N-terminal domain 82 118 IPR013210 -
Vimu6g01681 860 FunFam Leucine-rich repeat receptor-like protein kinase 558 649 - -
Vimu6g01681 860 SUPERFAMILY Protein kinase-like (PK-like) 577 846 IPR011009 -
Vimu6g01681 860 SUPERFAMILY L domain-like 117 455 - -
Vimu6g01681 860 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 267 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01681 Vimu-Chr6 15423062 15425873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01681 71 846 Receptor kinase-like Gene Family AT3G51740 63.286 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu6g01681 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01681 - - pvu:PHAVU_001G246800g 1503.8