Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01671 ATGTCTCCGACCGTGGGAGTCAGCGTCCCACTATTGGGCGAGTCCAACGGAGCGGTGCAGCCGGCCTCCGTCCCCGGTGCGGTGTTCAACGTGGCGACGAGCATAGTCGGCGCCGGAATCATGTCAATTCCGGCGATAATAAAGGTTCTTGGTGTGGTTCCCGCTATCGCCATGATTATCGTCGTGGCCGTGCTAGCGGAACTCTCTGTCGAGTTTCTCATGCGCTTCACGCACTCCGGCGAAACGACGACGTACGCCGGCGTCATGAGGGAAGCGTTCGGGTCGCCGGGAGCGTTGGTTGCGCAAGCTTGCGTCATCATCACCAACGTTGGGGGCTTAATTCTTTACCTTATCATCATAGGGGATGTGCTGTCTGGAAAGCAAGATGGAGGTGAAGTGCATTTGGGTATTCTGCAACAGTGGTTTGGTATTCATTGGTGGAATTCCAGGGAATTTGCTCTTCTCTTCACTTTGGTTTTCGTCATGTTTCCATTGGTATTGTACAAACGTGTAGTTTTTGCTTTTGGTGTTCTGGAACTGGTAGAGTCCTTGAAGTACAGTTCTGCAGTATCAACTCTTCTTGCAGTGGCATTTGTTGGCATATGTTGTGGGTTGGCTATTTTTGCACTGGTGCAAGGAAAAACACAGACTCCTAAATTGTTTCCTGTGTTGGACAACCAAACCTCATTCTTTGATCTATTTACTGCAGTTCCCGTTGTTGTCACAGCTTTCACATTTCATTTTAACGTACATCCAATTGGGTTTGAGTTTGCCAAGCCATCTCAAATGACAACAGCAGTTCGATTAGCATTATTGCTTTGTGCTGTGATCTACATTACAGTAGGCCTATTTGGGTACCTATTATTTGGGGATTCAACACAATCAGACATTCTCATCAATTTTGACCAGAGTAATGATTCTGTGGTTGGTTCCGTGTTCAATACTTTGATCCGTGTAAGCTATGCGCTCCACATCATGCTGGTGTTTCCTCTCTTAAACTTCTCATTGAGATCCAACATAGATGAAGTTCTCTTCCCCAATAAGCCTATGCTAGCCACAGACAACAAAAGATTCATGATCCTCACCGTAGTGCTGCTTGTATTCTCCTACCTTGCTGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAATTTCTTGGATCAACATCGGCAGTGTGCCTTGCCTTCATTTTCCCTGGCTCTATTGTTTTAAGGTAA 1218 0.4639 MSPTVGVSVPLLGESNGAVQPASVPGAVFNVATSIVGAGIMSIPAIIKVLGVVPAIAMIIVVAVLAELSVEFLMRFTHSGETTTYAGVMREAFGSPGALVAQACVIITNVGGLILYLIIIGDVLSGKQDGGEVHLGILQQWFGIHWWNSREFALLFTLVFVMFPLVLYKRVVFAFGVLELVESLKYSSAVSTLLAVAFVGICCGLAIFALVQGKTQTPKLFPVLDNQTSFFDLFTAVPVVVTAFTFHFNVHPIGFEFAKPSQMTTAVRLALLLCAVIYITVGLFGYLLFGDSTQSDILINFDQSNDSVVGSVFNTLIRVSYALHIMLVFPLLNFSLRSNIDEVLFPNKPMLATDNKRFMILTVVLLVFSYLAAIAIPDIWYFFQFLGSTSAVCLAFIFPGSIVLR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01671 405 PANTHER AMINO ACID TRANSPORTER 18 402 - -
Vimu6g01671 405 Pfam Transmembrane amino acid transporter protein 22 402 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01671 Vimu-Chr6 15352124 15355720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01671 1 405 Amino Acid or Auxin Permease AAAP Family AT3G56200 56.897 1.43e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01671 - - gmx:100815694 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01671 6 15352124 15355720 Vimu6g01671 6 15352124 15355720 ECH
Vimu6g01671 6 15352124 15355720 Vimu1g00844 1 5684627 5687622 PCT
Vimu1g00843 1 5678827 5682284 Vimu6g01671 6 15352124 15355720 PCT