Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01670 ATGGTTTCTAAAGAGCAAAAGCGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTCTTACTAACTCTCATGCACTAAACAAAACATCGATCATAATAGATGCGTCAAAGTATATCCAGGAATTAAAGCAAAAGGTGGAAGAATTGAATCAAGACTTAGCCAATGCACAAACTTCAACTGACCAAAATACTTTGCCTATGGTCACAGTAGAAACCACAGAGAAGGGTTTTGTTATTAATGTTTTTTCAGCAAAGAGTTGTCCTGGTCTGTTTGTTTCTATATTGGAGTCATTTGAAGAGATGAGTCTTAATGTGCTTGAAGCTAGGGCTACTTGTACGGACACTTTTCGATTTCATGCTGTTGGAGGAAAAAACGAAGAAGAAGGTAAGAATATTGATGCACGAGCTGTGAAACAGGCAATTGGACAAGCAATAAAGAATTGGAGCCAAAATGCTGACCAAAAGTAA 471 0.3843 MVSKEQKRAALHEKLQLLRSLTNSHALNKTSIIIDASKYIQELKQKVEELNQDLANAQTSTDQNTLPMVTVETTEKGFVINVFSAKSCPGLFVSILESFEEMSLNVLEARATCTDTFRFHAVGGKNEEEGKNIDARAVKQAIGQAIKNWSQNADQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01670 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 151 - -
Vimu6g01670 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 65 IPR036638 GO:0046983
Vimu6g01670 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01670 Vimu-Chr6 15346189 15347576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01670 1 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 26.846 7.19e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01670 - - gmx:100814138 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01670 6 15346189 15347576 Vimu1g00841 1 5657738 5659286 ECH
Vimu6g00131 6 1694097 1694984 Vimu6g01670 6 15346189 15347576 ECH
Vimu2g02081 2 15474329 15475504 Vimu6g01670 6 15346189 15347576 ECH
Vimu6g01670 6 15346189 15347576 Vimu6g01670 6 15346189 15347576 ECH
Vimu6g01670 6 15346189 15347576 Vimu1g00841 1 5657738 5659286 PCT