Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01669 ATGGAGGCAGTTCACTCATGGGTTTCAGAGCACAAGCTCACCACCATTGGAGCACTCTGGGCATCTGGAATTGGAGCATCACTTGTGACTTATTCATGCAAAAAGTCGCCTTTGAAGCCTAGTCTCAGGCTTATCCATGCCAGGATGCATGCTCAGGCGCTAACTTTAGCAGTGTTGTCTGGTGCAGCTGCTTACCATTATTATGAGAAAGGTTCTCTTCACCCAAAACCAGAGGCAGATAATATTTCTGCCACCAATTTCAACCATCTTAAGGCAGAGGACATGGATTGTTGTGTGTGTACAACTATGCCACTGATACTAAGGCCTCCGAGGAATACAATATGTGGAGCATGTTACGAAGGAGTGAGGAGCATAATCAACATGATGAGCAATTTCGAAACTGAGAAAGTAAAACAAGTAGTGGCCAATCCAAATCCAAACCCTTCTCCAACACTTGATGATTGTATAAGATGGTGTTCAGAGCATTTAGAACAGTTTAATCAGGAGAAGGAAGACTTGGTTTTTCTGAGCGGCTTTGTTGCAGCCTTCAAAGAACAGATTCACACAGATATATTGGTCATTCCAGGAAGACAGGGTCCACCTATACCTGCACATAAGTCCGTTTTGGCTGCAAGATCAGAAATATTCAAGAACATGCTAGAGTGCGATGAATGCAAAGAAGCACCGAGTAAGAGCATAACTATACCCGATGTGAAACACGAAGAATTAGAGTGTCTTCTTGAGTTTCTGTACAGTGGAAGCTTGGGTGAGGAAAAATTGGAGAAACATGTGTACGCGCTGTCACAAGCAGCGGATAAGTATGTGATCCCACATTTGCTGAAACACTGCGAACGGTACCTGCTGAGGTCGCTAAGCACTTGTAATGCCCTTGAGACACTGGAGATTGCGGACACTTGTTCCAACCAGAAGTTGAAGGAGACAACCTTGGATTTCTTGGTTAAGAACATTGACCGTGTTGTGTCATCACCTAAATTTGAAGCTTTTGTTCACAGGAGCCCACACCTCACCGTGCAACTCGTTACAATGGCCTTTGCCAATGCTGCTAAATAA 1071 0.4426 MEAVHSWVSEHKLTTIGALWASGIGASLVTYSCKKSPLKPSLRLIHARMHAQALTLAVLSGAAAYHYYEKGSLHPKPEADNISATNFNHLKAEDMDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMSNFETEKVKQVVANPNPNPSPTLDDCIRWCSEHLEQFNQEKEDLVFLSGFVAAFKEQIHTDILVIPGRQGPPIPAHKSVLAARSEIFKNMLECDECKEAPSKSITIPDVKHEELECLLEFLYSGSLGEEKLEKHVYALSQAADKYVIPHLLKHCERYLLRSLSTCNALETLEIADTCSNQKLKETTLDFLVKNIDRVVSSPKFEAFVHRSPHLTVQLVTMAFANAAK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01669 356 Gene3D Potassium Channel Kv1.1; Chain A 158 291 IPR011333 -
Vimu6g01669 356 Gene3D - 292 356 - -
Vimu6g01669 356 Pfam BTB/POZ domain 184 290 IPR000210 GO:0005515
Vimu6g01669 356 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 114 354 IPR044784 -
Vimu6g01669 356 CDD BACK 292 332 - -
Vimu6g01669 356 ProSiteProfiles BTB domain profile. 189 259 IPR000210 GO:0005515
Vimu6g01669 356 ProSiteProfiles HIG1 domain profile. 1 77 IPR007667 -
Vimu6g01669 356 Pfam Hypoxia induced protein conserved region 10 61 IPR007667 -
Vimu6g01669 356 SMART BTB_4 189 291 IPR000210 GO:0005515
Vimu6g01669 356 SUPERFAMILY POZ domain 175 289 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01669 Vimu-Chr6 15337183 15342197 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu6g01669 BTB 1e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01669 K10523 - gmx:100777561 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01669 6 15337183 15342197 Vimu6g01669 6 15337183 15342197 ECH