Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01657 ATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCATCCATGCCTTTAATAGACGAGACAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGAATACTGGGAGCACCTAATAAGTATGACCAAGAAGCAAACAAACCAACTGATAAGGTTTGTCAGCTCAAATTACCTGCAAATGCAGATGTAGATGATTTTGAGCAATACAATTTCAAATTTCTTTCATTGGGCCATTTGTCTAGGACTACATGTTTTTCACATTTTGAAGCCTCTTCGTTTTTGTTTCCTTTGTGGATGATACGAATAGGGGGGAGTGAAACGTTTAGTCCCGCCATTTTGAACTTTGGGGAATCTATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGAAAGAGCCGTTTGAGGAAAAAGGCCTACGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTCGAACGTGCAAGACAGCAGGGTATGTACATAGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCAGGACCGTTAAATTCAGGAATTACAACCTTCGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATCACAGAACTGAGAACCGCTTTAAATGCTCATATCAGTGACATAGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCGGATGTGTTCTATGTAATGTCTGGTATGTGGAAAACAACGGCTGAAAGATTTTTCCTTTGGATCGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGACCCCTGATTGAACTTCTCACAGAGCAACAACAGTTGGATATCTATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCTCTGTCACAAGGTATGGACAAACTCCGGCAAACTCTCGCTGATAGTGTAGCAGCCGGACAGTTCATGGAAGGAACGTACATTCCACAGATGACTTGTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGGAACGTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCTGCTCGATGCTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTCTGGTCTAACAGACCCCGTGAACCTGCTTAG 1251 0.4452 MSVYDPIHQISMWGEGFKSNGNLSASMPLIDETDMKLDSQSEDASHGILGAPNKYDQEANKPTDKVCQLKLPANADVDDFEQYNFKFLSLGHLSRTTCFSHFEASSFLFPLWMIRIGGSETFSPAILNFGESIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGPLNSGITTFEMEYGHWVNEQNRQITELRTALNAHISDIELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIELLTEQQQLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTCAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01657 416 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 130 174 IPR004827 GO:0003700|GO:0006355
Vimu6g01657 416 FunFam BZIP family transcription factor 131 180 - -
Vimu6g01657 416 Pfam Seed dormancy control 218 292 IPR025422 GO:0006351|GO:0043565
Vimu6g01657 416 PANTHER TRANSCRIPTION FACTOR TGA9 2 414 - -
Vimu6g01657 416 Pfam bZIP transcription factor 134 166 IPR004827 GO:0003700|GO:0006355
Vimu6g01657 416 ProSiteProfiles DOG1 domain profile. 201 411 IPR025422 GO:0006351|GO:0043565
Vimu6g01657 416 Gene3D - 133 180 - -
Vimu6g01657 416 SUPERFAMILY Leucine zipper domain 132 174 IPR046347 GO:0003700|GO:0006355
Vimu6g01657 416 Coils Coil 151 178 - -
Vimu6g01657 416 SMART brlzneu 128 199 IPR004827 GO:0003700|GO:0006355
Vimu6g01657 416 CDD bZIP_HBP1b-like 135 184 - -
Vimu6g01657 416 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 135 150 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01657 Vimu-Chr6 15263335 15266274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01657 1 416 Calmodulin-binding Proteins AT5G65210 58.173 3.84e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g01657 DOG1 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01657 K14431 - gmx:100793353 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01657 6 15263335 15266274 Vimu6g01657 6 15263335 15266274 ECH
Vimu11g04073 11 62484886 62488264 Vimu6g01657 6 15263335 15266274 PCT