Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01656 ATGGCGGATCACTCAGACTCTTCTCCTCTCGTCCCTCCCCTTCCTCTCACCGACCCTTCCGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACCGATGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTACACCGAGAATGTTTGGATCATTGGCGAGCAGTTAAGCCTGTGGTTGACTTGACAGCATTTCACGTCACTCTTAGGGGTTTTCTTTTAATTCTTTCCCTTCAGTTATCTTTGTGTCTGCTGGCTACCCATTACCCATTTATTCCGTTCTTACCTAAGAAATATACATTACTTTTAATTTTGTTTTTTGTTTTGCAGGAAGGGTTTGCCTTTGCTCACTGTACAACATGCAAGGCTCCTTACCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGGTTTTTTGTCACCAGAGACATTCTGTTTATTTTTCTGTCTGTCCAACTTGTCATTGCATCACTGGCATATTTGGTTTATCTAATTGATGGTTACCAGCAATATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTATTTTTTGCACTGCTTGGCCTATCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAACCTTGTAGAGAGTTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCTGGCACTCTTTGTATGTGGACTGATTGCACCACTTGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGCTGTTTGGGGGGTGCTGGTGAAGCAGGGCTACCATTATTATTCATAATGGCTCTGGTTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTGGCTACAATGGTAGGTCAGCGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGCTAACAAAGATAGTGTGGCGACATGTTTGGGTATGTGGCAGTGTGTTGCAACCCTCATATTTTGTAATTGAGTATGTTGCTGAAATGGCTATAGTAATTTGGCTTGATTTAATCTTGTATCTTGATGCCTTAAAGCTGGATTTTGGGTTCGTTGGACAGATTAGGATTATTGCATCTGAGGAGTATGTGGTTGAAGACGTCGATGGAGAGCTGACAGGGTCTGATTGGTCTCCCCCGGCTCTCCCTCCTGAGCATGTTCAGCAGTTAAAAACATTGGGTCTACTATGA 1302 0.4301 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKPVVDLTAFHVTLRGFLLILSLQLSLCLLATHYPFIPFLPKKYTLLLILFFVLQEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKIVWRHVWVCGSVLQPSYFVIEYVAEMAIVIWLDLILYLDALKLDFGFVGQIRIIASEEYVVEDVDGELTGSDWSPPALPPEHVQQLKTLGLL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01656 433 CDD RING_CH-C4HC3_MARCH 34 70 - -
Vimu6g01656 433 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 71 - -
Vimu6g01656 433 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Vimu6g01656 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 148 IPR013083 -
Vimu6g01656 433 SMART ringv_2 33 73 IPR011016 GO:0008270
Vimu6g01656 433 SUPERFAMILY RING/U-box 29 71 - -
Vimu6g01656 433 Pfam RING-variant domain 34 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01656 Vimu-Chr6 15247946 15252895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01656 1 433 C3H Transcription Factor Family AT2G22120 64.055 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01656 - - gmx:100791777 595.89