Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01648 ATGATCATTGGCATTGATTCCTTTGTGGGCTCCTCAGGAGAAAGTATAACTTCAAGTGTAGTGGTTATAGTACAGAAGGATATCGTTTCAAGTGTGGTGAAATTAAAACAATTAGTGAGCCTCGTGGATGCTAAAGTTTCTTGGATTCTGCAATTCGTTGTATCTCTCTTTCTTGACATAAAGAATTGCTGGTTCTTGGCTGCACCATTAACTGTCAACAATCAATATTTAACAAATATTTCGTTGAAGATCAATGTTAAGCTTGGGGGATTGAATTCAATATTACCAAGAAGAGATTTTCTTTCAGTCCTATCTGTTTCTGAAGCTCCTACAATGATTGTTGGCATTGATTCCTTTGTGGGCTCCCTAGGAGAAAGTATTCCTTCAAGTGTAGTGGTTATAGTACACAAGGGCTTGGGTATAGGACATAGGGAGGGCTTAGTAGAAGTTAGAGGCTTAGGTCAAAGTAAG 471 0.3843 MIIGIDSFVGSSGESITSSVVVIVQKDIVSSVVKLKQLVSLVDAKVSWILQFVVSLFLDIKNCWFLAAPLTVNNQYLTNISLKINVKLGGLNSILPRRDFLSVLSVSEAPTMIVGIDSFVGSLGESIPSSVVVIVHKGLGIGHREGLVEVRGLGQSK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01648 157 SUPERFAMILY Ribonuclease H-like 74 126 IPR012337 -
Vimu6g01648 157 Pfam Piwi domain 73 132 IPR003165 GO:0003676
Vimu6g01648 157 Gene3D - 17 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01648 Vimu-Chr6 15194728 15196598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01648 60 135 Eukaryotic Initiation Factors Gene Family AT5G43810 36.842 1.42e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01648 K11593 - psom:113287297 72.7886