Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01647 ATGAAGATCAATGTTAAGTATGATGGATTCAAGTCAATCTTACCAAAAGAAGATTTTCTTTTAGTCCAATCTGTTTGCGATGCTCCTGCCCTAATCATTGCCATTCACGCGTTTGTGGGCTCTCCAAGACACTATTCCGTAGATGGTACAAATGGTCTTCATATTACTCCCACAACCAAAAAACCTGAAGAAAATTTTGATGGACGATCGCCATTGAGAGAGACCAGAAGAAGATTCTGTGATCTTGCGGACAAAAAAGCCAAAAAGGTAGCTCGGATTAAAAGTGATGAAATAGAGGATCTTAAAGTGTTGGCAACTAGTGCCGCATCGGCTTTGGCTGCTAGGAAGCCTTATTGGGTAATTGATGAAGAATTGGGCATGGGTTATCGTGAGATGAAATCTGCACCAATTATGACTAAATCTTCTTTGGACATTGGAGAGAGAGAAGACTTCAAACCAAAAAATGGGAGGTGGAATTTCAAGAATAAGGAGGAGGTATGCCTGGGTGCATGGGTCTTCATTGTAGTTATGGAAGTATGCGAAATGGGTTGTCACATACTTTCGTGTTCTGCATACATTGCCAGTCCTTCATCAGAGAAAACCTGGACCATGTGTACCACCTTTCCGGAATATGTTGCTGCTCTGGCCACTATAGTTGGATCTATATTCGGTGGTGTTGGTATTGCTTGTCTTCCATTGGGACTTATACTTTCTTTCATTAGGCGTCCAAAGGCTGTTATCACTCATTCACAGTATATCAAGGAAGCTACTGAATTGGGCAAAAAGGCAAAAGATCTTAAGAAAGAAGCTGAGTCACTTCGTCAGGAAGAAAAAGCTGGTTCAAAGGAAGATGTCAAGCTTATTGAAGAGATGTACCCACAAGGAGAAAAGGCTGAGGCAACGTGGGCACTAACAGTTCTAGGGTATCTGGCAAAACTTTTTTTGGAAATTTTAAGGTTAATCGTTTCTGTGGCGTGGGTTGGTCATATCATTATCTGTCTATTAGTTGATCCTCCTCTTTGTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGGTCTTCTTGGTACAGCTGCATTTGCATTCTTCTGCTTCTACCTTCTTCTTGCTGTGATTGCTGGAGCCATGGTGCTTGGGCTGAGACTAAAGAGGATTGATGTTTTGTTAAGGGAAAAGGAAGACACAAGTAAAGAGAACCAACAACTATCTTGGAAATTAGATGAGATTAAACAAGGGAAAATGTCAACACCTGATACAACTGGTGAACAAGCGAAGAAGGAAGAAAAGAACACAAGAATTCAGGCCATTGTCAATTTTGTCACAATGCAGTTTCAGCTATGCACTATCTTTTTTACATTTTCCTTGGGTACAAGAACACGTTATTTTGGCCGGACCATTCTTCATGGTGGTGCAAGGTATCAAGCTACTGATCGTGGGTTTGTTGTCCGCGATATCAAGTTTTCGGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGGTGA 1518 0.4111 MKINVKYDGFKSILPKEDFLLVQSVCDAPALIIAIHAFVGSPRHYSVDGTNGLHITPTTKKPEENFDGRSPLRETRRRFCDLADKKAKKVARIKSDEIEDLKVLATSAASALAARKPYWVIDEELGMGYREMKSAPIMTKSSLDIGEREDFKPKNGRWNFKNKEEVCLGAWVFIVVMEVCEMGCHILSCSAYIASPSSEKTWTMCTTFPEYVAALATIVGSIFGGVGIACLPLGLILSFIRRPKAVITHSQYIKEATELGKKAKDLKKEAESLRQEEKAGSKEDVKLIEEMYPQGEKAEATWALTVLGYLAKLFLEILRLIVSVAWVGHIIICLLVDPPLCPFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGAMVLGLRLKRIDVLLREKEDTSKENQQLSWKLDEIKQGKMSTPDTTGEQAKKEEKNTRIQAIVNFVTMQFQLCTIFFTFSLGTRTRYFGRTILHGGARYQATDRGFVVRDIKFSENYRLYSRSHFVKG 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01647 505 Coils Coil 249 283 - -
Vimu6g01647 505 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 186 386 - -
Vimu6g01647 505 Pfam LMBR1-like membrane protein 245 383 IPR006876 -
Vimu6g01647 505 Pfam 1,3-beta-glucan synthase component 435 505 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01647 Vimu-Chr6 15180328 15187258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01647 436 505 Cell Wall Biosynthesis AT3G07160 87.143 2.99e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01647 K14617 - gmx:100800757 325.865