Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01643 ATGAAAGCCAATACATCCAATCCAAGGAATCTCTCTTCTTCCACAAACTCATTTCCTTGCACACGGGAGTTCAGCAGCAGTCAACAATGTATTGGAAACACACATCATTGTTCTGCATACATTGCCAGTCCTTCATCAGAGAAAACCTGGACCATGTGTACCACCTTTCCGGAATATGTTGCTGCTCTGGCCACTATAGTTGGATCTGTGCTTTTTGCTATAAGTCAATCCTATCTCATATGCTGCCTGATATTCGGTGGTGTTGGTATTGCTTGTCTTCCATTGGGACTTATACTTTCTTTCATTAGGCGTCCAAAGGCTGTTATCACTCATTCACAGTATATCAAGGAAGCTACTGAATTGGGCAAAAAAGCAAAAGATCTTAAGAAAGAAGCTGAGTCACTTCGTCAGGAGGAAAAAGCTGGTTCAAAGGGTAGGAAATTTCGTAAAAATGAGTTGCTTCAATTAGAAGATGTCAAGCTTATTGAAGAGATGTACCCACAAGGAGAAAAGGCTGAGGCAACGTGGGCACTAACAGTTCTAGGGTATCTGGCAAAACTTTTTTTGGAAATTTTAAGTGCTACTAGACGTATAAGAGTGGCAATAGACACCCCTTCGATGGGGGCAGTGAATACAGTTGATCCTCCTCTTTGTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGGTCTTCTTGGTACAGCTGCATTTGCATTCTTCTGCTTCTACCTTCTTCTTGCTGTGATTGCTGGAGCCATGGTGCTTGGGCTGAGACTAGTTTGCATTACTATTCATCCAATGAAAGACGAGAATGACAACAAACTAACGGATCAAAAAGTCATCAACAAAATCCAAGAGAAGAGGATTGATGTTTTGTTAAGGGAAAAGGAAGACACAAGTAAAGAGAACCAACAACTATCTTGGAAATTAGATGAGATTAAACAAGGGAAAATGTCAACACCTGATACAACTGGTGAACAAGCGATGAAGGAAGAAAAGAACACAAGAATTCAGTATCAAGCTACTGATCGTGGGTTTGTTGTCCGCAATATCAAGTTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGAGATGTTGTGTACGCATGTGCACCCTATATTTCTAGTGTTTTCCTTGGTACCCTCATTGCATCTTCCATGCAGGTAGCTCGGATTAAAAGTGATGAAATAGAGGATCTTAAAGTGTTGGCAACTAGTGTCGCATCGGCTTTGGCTGCTAGGAAGCCTTATTGGGTAATTGATGAAGAATTGGGCATGGGTTATCTTGGACATTGGAGAGAGAGAGAAGACTTCAAACCAAAAAATGGGAGGTGGAATTTCAAGAATAAGCTTGGAGCCTTGAATTCAATATTATCCGATGAAGTCGTTGTTGTTTCCAACGCTCCCACCCTCATTGGAACTGTCGTGTCCCTTGGCTCTCAAGAGCAAACTACTCCTTCAATTGTAGAAGTGACAGATAAGTAA 1506 0.4117 MKANTSNPRNLSSSTNSFPCTREFSSSQQCIGNTHHCSAYIASPSSEKTWTMCTTFPEYVAALATIVGSVLFAISQSYLICCLIFGGVGIACLPLGLILSFIRRPKAVITHSQYIKEATELGKKAKDLKKEAESLRQEEKAGSKGRKFRKNELLQLEDVKLIEEMYPQGEKAEATWALTVLGYLAKLFLEILSATRRIRVAIDTPSMGAVNTVDPPLCPFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGAMVLGLRLVCITIHPMKDENDNKLTDQKVINKIQEKRIDVLLREKEDTSKENQQLSWKLDEIKQGKMSTPDTTGEQAMKEEKNTRIQYQATDRGFVVRNIKFSENYRLYSRSHFVKGDVVYACAPYISSVFLGTLIASSMQVARIKSDEIEDLKVLATSVASALAARKPYWVIDEELGMGYLGHWREREDFKPKNGRWNFKNKLGALNSILSDEVVVVSNAPTLIGTVVSLGSQEQTTPSIVEVTDK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01643 501 Coils Coil 285 305 - -
Vimu6g01643 501 Pfam LMBR1-like membrane protein 150 274 IPR006876 -
Vimu6g01643 501 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 8 274 - -
Vimu6g01643 501 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01643 Vimu-Chr6 15154419 15160024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01643 341 382 Cell Wall Biosynthesis AT3G07160 65.116 4.45e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01643 K14617 - gmx:100796998 370.548