Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01639 ATGCATAGAGGTATATTATTTGCGCACGTGATTCCATTCCAAACCGTTGGCTCAAGCGAATGTGAAGCCATTAAGCCACAAAGCTTAGTTAGAGGGTGGAGCTGTTTGTTGTTCAAGACTGGTCATTCATTTAAATCTGAATTTCGGTTTGGACAGGGAGGATTTGATGTTCTGTCAGACTCTCCAGTGCTGATTGTAGAGGAGCGGTTTCCTGGATTGATCTGTTTGGGAGTGTCTGCGCGAAGCGAAGCTGGCGACCACACTGTCTTGGAGGAAAGAAATGGTGATGGGAAGGCTCAAGAAGCAGATAATCTACCTCCCCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGTACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAGGAGAAAGAGCATTCTTTGAAGCAGTTATTGGAGCTTATTGATCTTCGAGAAAATGTTTTCAGTGCTGTTGGATCTCATTCCCAGGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCAGGGTCTTCAAATGTGAAGATACAGGCAGCAACTGTATTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCACCGTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTGGCTGCTGCAAAGACAATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTTCCAGTGCTATGGGAGCAGTTGCAAAAGGGCCTGAAGACAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAGAATCTCTCCAGCAACACTGATAGATTCTGGAATGCCACAATACAAGCTGGAGGGGTGGACATATTAATTAAGTTACTGAAAACAGGGCAGTCTAACACTTTAGCAAATGTGTGCTTTTTACTTGGCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACAGCTGAGGAAACTAAACAACTTCTCAAACTTTTAAGCCCTGGTAATGATGCTGCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGATGCAAGAAAAGAGATAGCCAATTCCAATGGTATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCGATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCGCCTGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATATATGACGACAATGCAGAATCTACCAGGGCCACAGATCCTTTGGCAGTTGAGCAGACATTACTTGAACAATTTAAAACTGGCTTGTCATTCCTTGTGCAGGAACGGACTATTGAAGCACTAGCTAGTTTGTATAGCAATCCTATACTGTCAATCAAACTTGCAAATTCTGATGCAAAACGTCTGCTTGTTGGTTTAATTACGATGGCTGCTAATGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGTAGTTTGTGGAGTGCACTTCAAGGCCGTGAAGGAATTCAGCTATTGATATCTCTTCTGGGGCTTTCATCGGAACAACAACAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTCATGAAAATGATGAAAGTAAATGGGCTATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAGGCAAGGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTTTGGCTGTTGAAAAATGGAAGTCCAAATGGAAAGGAGATTGCAGCAAAGACTTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAACATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAGGGTAGTGCTGCCAGTGATGCAATCGATACAATGATTAAATTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGTGTCTGCTCTAGCGGGTATTTTTGAAACAAGGAAAGATGTGCGTGAGAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCAGAAAGTATCTTAATGGAGTCCTCACGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGTTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTTCACTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAGTTGCGGAGAAAGCTGTTGCAGAAGAAGTCATCTTGGCTGCTACTAGAGTATTACGTGAAGGTACAATTTATGGAAAATCACAGGCTGCAGCAGCAATTGCTCGCCTTTTACATTCTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTGTCAATGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTCAGAAGTGAATGGTGCACACAGCAAGCCTGCTTGGGCAGTATTGGCTGAATTTCCTAAAAGCATCAGCCCAATAGTTCTGTCCATTACTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCGATTATGTAAAGATCAACCTATTGTTTTGGGAGACATTGTTGTTTCTGCCCCTGGATGTATACCTTCTATAGCTAAGAGGATAATCAATTCCTCTTCTAAAAATATAAAGGTCAAAATTGGTGGCGTGGCTGTTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTCAATTTATCAAACCTGTGTGGTAATCTAGTTCAGTCTCTTGTTGATATACATATTTCTTCACAGGCTACTTTGGATTATCAGCATGATGACAGCAGGGACGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAGTACTGGCACCACTATTGTTTCTGGTGCCAACTTAGCTATATGGTTACTAACTGTTCTTGCTTGCCACGATGAAAAATGTAAAACTGCAATAATGGAGGCGGGTGCAATTGAGTTTCTCAGTGACAGGATTGCAAATTGTTTCTCGCTGTACAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGCTGGCAATATTGTTTCAGGATAGGGATATTATACGAGCACATGCAACCATGAAATCGATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCTCAATCAATAGCTAGCTTAGTCTGTAATGGTAGCAGGGGAACGTTGCTGTCTGTGGCAAATTCTGGGGCAGCTGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTTTAGAATTGGCAGAGGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATTTGCTCAAACCAATTCCAGAACGCCCGGGCGCACCGTATTTAGCACTTGGGCTTTTGACTCAGCTTGCTGTAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGTGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACAGAAGAAGCTGCTACAGATCTGTTAGGGATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAATCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTACTACGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCCGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTCCAGCCCTTGGTGGAGATTCTTAATACCGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGCTATTGAGTGAAAACCCTTCAAAAGCACTCGCTGTTGCTGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATCCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTAGTCACTCTCCTTGTAAGTGAGTTTAGTCCTTCTCACCATTCAGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGGCTACTTTACGGTAGGAATTACGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTGGGAAAAGACAGGCCAGCTTGCAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCAAAAGGACCACCAGCTGCTAAAGTTGTTGAACCCCTGTTTATGTTGCTAATAAGACAAGACTTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGTCTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCCAGTAACACAGCATGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAACAGAGAGCTGTGAAGGCCCTAGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCAGATCCTTCCATTCCTCATGCTTTATGGGAATCTGCGGCCTCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACCTGGAAGTTCCAGTTGCTGTTTTGGTTAGGTTGCTTCGATCTGGCTTAGAAAGTACAGTTGTTGGTGCATTAAATGCTCTCCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCAATGGCTGAAAGTGGCGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACATTGGCTCTTGGTGATCTATTTCAGAACGAGAGTCTTGCTCGGTCAAGCGATGCAGTTTCAGCCTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAGCCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTACAAAACCTTGTGATGAACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATTTTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAGCGAAGAGTATCTTAAAGCCTTAAATTCTCTTTTTAGCAACTTCCCAAGACTGAGAGCTACTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAGGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGCCCCTCCTCGCTTTCAGGAGAAGGCAGAGTTTTTACTGCAGTGTTTGCCAGGAACTTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTCGGAAACCCAAGTGTTTTTTGCAAGCTTACGCTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCCAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTAGTAATGCTCGGAGCAGTATCTGGAGAGTACACTCTTGTGCCAGAAAGTAAGAGTGGCCCTTCGAGGAATTTAGAAATAGAATTCCAGTGGTCGAACAAGTGA 6672 0.4275 MHRGILFAHVIPFQTVGSSECEAIKPQSLVRGWSCLLFKTGHSFKSEFRFGQGGFDVLSDSPVLIVEERFPGLICLGVSARSEAGDHTVLEERNGDGKAQEADNLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEHSLKQLLELIDLRENVFSAVGSHSQAVPVLVSLLRSGSSNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSNTDRFWNATIQAGGVDILIKLLKTGQSNTLANVCFLLGCMMMEDASVCSKLLTAEETKQLLKLLSPGNDAAVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDNAESTRATDPLAVEQTLLEQFKTGLSFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWSALQGREGIQLLISLLGLSSEQQQECAVALLCLLSHENDESKWAITAAGGIPPLVQILESGSAKAREDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTTLLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIDTMIKLLSSTKEETQAKSVSALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVVAIARDALPSLVSLANSSVLEVAELATCAVANLILDSEVAEKAVAEEVILAATRVLREGTIYGKSQAAAAIARLLHSKRQVDYAVTDCVNRAGTVLALVSFLDFAVNGLSSTSEALEALAMLSRSEVNGAHSKPAWAVLAEFPKSISPIVLSITDSTPVLQDKAIEILSRLCKDQPIVLGDIVVSAPGCIPSIAKRIINSSSKNIKVKIGGVAVLICAAKVNHQRLVEDLNLSNLCGNLVQSLVDIHISSQATLDYQHDDSRDVISICRHTKEANDGKSSTGTTIVSGANLAIWLLTVLACHDEKCKTAIMEAGAIEFLSDRIANCFSLYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELAEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPYLALGLLTQLAVDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVTLLVSEFSPSHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPPAAKVVEPLFMLLIRQDFGPDGQHSALQVLVNILEHPQCRADYTLSSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQHVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNESLARSSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMNSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVSEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLVPESKSGPSRNLEIEFQWSNK 2223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01639 2223 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2102 2223 - -
Vimu6g01639 2223 Gene3D - 486 682 IPR011989 -
Vimu6g01639 2223 SUPERFAMILY ARM repeat 287 679 IPR016024 -
Vimu6g01639 2223 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1897 1940 IPR000225 GO:0005515
Vimu6g01639 2223 Coils Coil 367 387 - -
Vimu6g01639 2223 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2101 2220 IPR035892 -
Vimu6g01639 2223 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 606 648 IPR000225 GO:0005515
Vimu6g01639 2223 Gene3D - 1724 2101 IPR011989 -
Vimu6g01639 2223 ProSiteProfiles C2 domain profile. 2085 2200 IPR000008 -
Vimu6g01639 2223 SMART C2_3c 2103 2199 IPR000008 -
Vimu6g01639 2223 Gene3D - 1359 1720 IPR011989 -
Vimu6g01639 2223 SUPERFAMILY ARM repeat 684 1028 IPR016024 -
Vimu6g01639 2223 Pfam Armadillo/beta-catenin-like repeat 595 635 IPR000225 GO:0005515
Vimu6g01639 2223 Pfam Armadillo/beta-catenin-like repeat 175 205 IPR000225 GO:0005515
Vimu6g01639 2223 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 101 2223 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vimu6g01639 2223 FunFam Coatomer beta subunit 1688 2101 - -
Vimu6g01639 2223 SUPERFAMILY ARM repeat 1652 2097 IPR016024 -
Vimu6g01639 2223 Gene3D - 1086 1235 IPR011989 -
Vimu6g01639 2223 SUPERFAMILY ARM repeat 947 1231 IPR016024 -
Vimu6g01639 2223 Gene3D - 683 1082 IPR011989 -
Vimu6g01639 2223 SUPERFAMILY ARM repeat 136 363 IPR016024 -
Vimu6g01639 2223 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1268 1312 IPR000225 GO:0005515
Vimu6g01639 2223 CDD C2 2104 2194 - -
Vimu6g01639 2223 Gene3D - 111 481 IPR011989 -
Vimu6g01639 2223 SMART arm_5 1553 1593 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1383 1424 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1929 1969 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 554 593 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 888 930 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 800 841 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1511 1551 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1802 1841 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 207 247 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 338 379 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 595 635 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 637 677 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 165 206 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 381 430 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1301 1342 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1470 1510 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1637 1679 IPR000225 GO:0005515
Vimu6g01639 2223 SMART arm_5 1256 1299 IPR000225 GO:0005515
Vimu6g01639 2223 SUPERFAMILY ARM repeat 1258 1640 IPR016024 -
Vimu6g01639 2223 Gene3D C2 domain 2102 2223 IPR035892 -
Vimu6g01639 2223 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1452 1686 - -
Vimu6g01639 2223 Gene3D - 1249 1358 IPR011989 -
Vimu6g01639 2223 Pfam C2 domain 2102 2198 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01639 Vimu-Chr6 15123891 15134999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01639 566 686 U-box Gene Family AT2G23140 41.803 5.84e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01639 - - gmx:100816765 3755.68