Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01628 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTTCCCTAACAGTTTTTCCAACACCTGCACAAAAAAAGCCACCGGCAGCACCAGGAGGGTACATTTCTATTTCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGACCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCATCTCCTACTCATCTTAAATCCGCACCTTCTTTCTCTCAGGAGCAAAACTCTTGGATTCTTCACCATCCCTCCGCATTAGACATGTTTGACCAAATTATTGATGCGTCAAAGGGAAAACAAATTGTCATGTTCCTCGACTATGATGGCACACTTTCCCCAATTGTTGAAGATCCTGACCGTGCTTTCATGTCTCACTCGATGAGGAAAACAGTGAGGAAACTTGCTAGGTGTTTTCCTACTGCCATAGTCACCGGAAGATGCAAAGACAAGGTATACAATTTTGTTCAGTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATTCTTTTTCAACCTGCCAGCGATTTTCTTCCCATGATAGATGAGGTGTACCAGCAATTGGTTGAGAAGACCAAATCAACTCCTGGAGCCATGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGACCTGGCACGCCAAGTGAAATCAGTTTTAAAGGACTATCCGAAGCTCCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCGACTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTATTAGAGTCCCTTGGTTTGGCCAATTGCAGTGATGTATTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGGTGATGAGCTTTCTTCAACGCTTGGTGGAGTGGAAACATATGTCCCAACGAGCACGTTCCCGGGTGTCAGAACAAAAATATTTCCTAGATCAAGAAGATAGCCTTGAGTTTGAGATAAGATCCATTGCCATTAATAATTATGAATTGAATACTTGGAGACTCAAGCATGAAGATGGGCCCCCATCAAACTACCTTGTTACAAGATTTCTGAAGCTGAGTCAAAAGTTGCAGTTGTGGGTTAGGCCGGGTTGGTGCTCAAAGAACGTACTGACATTTGTAAATGCTCCTTTTAGTTCTAGCGGTAGCATCATGGATTCATGTACTGCAGTAGACCAACCAAAGAAAGACAGAGAAGCAACAGAAAAGGGAGTGATACTAATACTCACCCGTATGGTGTCAGAAAGTTGA 1350 0.4311 MTQQNVVVSDTKSGVSLTVFPTPAQKKPPAAPGGYISISRRRVLKNLEINGDQRINAWVESMRASSPTHLKSAPSFSQEQNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVRKLARCFPTAIVTGRCKDKVYNFVQLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILFQPASDFLPMIDEVYQQLVEKTKSTPGAMVENNKFCLSVHFRCVDEKKWSDLARQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKVMSFLQRLVEWKHMSQRARSRVSEQKYFLDQEDSLEFEIRSIAINNYELNTWRLKHEDGPPSNYLVTRFLKLSQKLQLWVRPGWCSKNVLTFVNAPFSSSGSIMDSCTAVDQPKKDREATEKGVILILTRMVSES 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01628 449 CDD HAD_TPP 107 316 - -
Vimu6g01628 449 Gene3D - 108 316 IPR023214 -
Vimu6g01628 449 FunFam Trehalose 6-phosphate phosphatase 204 317 - -
Vimu6g01628 449 NCBIfam trehalose-phosphatase 104 317 IPR003337 GO:0003824|GO:0005992
Vimu6g01628 449 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 27 318 IPR044651 GO:0004805|GO:0005992
Vimu6g01628 449 Pfam Trehalose-phosphatase 109 345 IPR003337 GO:0003824|GO:0005992
Vimu6g01628 449 SUPERFAMILY HAD-like 107 316 IPR036412 -
Vimu6g01628 449 Gene3D - 188 274 - -
Vimu6g01628 449 FunFam Trehalose 6-phosphate phosphatase 198 274 - -
Vimu6g01628 449 NCBIfam HAD-IIB family hydrolase 108 317 IPR006379 -
Vimu6g01628 449 FunFam Trehalose 6-phosphate phosphatase 106 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01628 Vimu-Chr6 15024232 15028001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01628 102 346 Trehalose Biosynthesis Gene Families AT1G70290 27.027 8.38e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01628 K01087 - gmx:100794430 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01628 6 15024232 15028001 Vimu6g01628 6 15024232 15028001 ECH