Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01620 ATGTGCGGAATCCTCGCAGTGTTGGGTTGCGTCGACAACTCTCAGGCCAAGCGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGGCATAGAGGTCCTGATTGGAGTGGCATACATTGCCATGATGATTGTTACCTTGCTCATCAAAGGCTTGCTATTGTTGACCCTACTTCAGGGGATCAACCTTTGTACAACGAAGACAAGACTGTTGTTGTCACCGTAAATGGGGAGATATACAACCACAAACAATTGAGACAGAAACTGAGTTCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAGTATGGGGAGGAATTTGTTAACATGCTGGATGGGATGTTCGCCTTTATTCTTCTTGATACTCGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGCTGGGGTCTTGATGGATCAACATGGTTTGCATCTGAAATGAAAGCTCTGAGTGATGATTGTGAGAGATTCATGTCATTTCCTCCGGGGCATATATATTCCAGCAAACAAGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTTTCGGAGATTGTTCCATCAACTCCCTATGATCCAATACTTTTGCGTGAGACCTTCGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGAGTTCTTTTGTCGGGAGGATTGGACTCATCACTTGTTGCCTCTGTGGTCAATCGTTATTTAGCGGAATCTGAGGCGGCTCGTCAATGGGGATCACAGTTGCATACTTTCTGTATTGGTTTAAAGGGCTCTCCGGACTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCACGAACTTTATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGACGTAACGACTATCAGAGCAAGTACTCCAATGTTCCTTATGTCCAGGAAAATTAAATCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTTCATAAGGCACCTAACAAGAAAGAGCTTCACGAAGAAACTTGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTGAGAGCCAATAAGTCAACTGCAGCATGGGGAGTAGAGGCCCGTGTACCATTCTTGGATAAAGAATTTATCGAAGTAGCAATGAGTATGGATCCGGAGTGGAAAATGATAAGGCGTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGAAAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGACGGGGTTGGTTACAGTTGGATTGATGCCTTGAAGGATCACGCTGATAAACAAGTCCCAGATGCAACAATGCTTGCTGCCAGTTTTATTTACCCTGAAAACACTCCTACTACCAAAGAAGGATACCTCTACAGGACAATTTTTGAGAAGTTCTTTCCGAAGAATGCAGCAAGGGCAACAGTTCCAGGGGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCGGCATGGTCCAAAAATCTTGACCCTTCTGGTCGTGCGGCGCTTGGTGTTCATGAAGCTTCATATGATGCGGTGGATACCAAAGTTGACAAACCCAAAAATGGAACACTTTAG 1710 0.4357 MCGILAVLGCVDNSQAKRARIIELSRRLRHRGPDWSGIHCHDDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLRQKLSSHQFRTGSDCEVIAHLYEEYGEEFVNMLDGMFAFILLDTRDKSFIAARDAIGITPLYLGWGLDGSTWFASEMKALSDDCERFMSFPPGHIYSSKQGGLRRWYNPPWFSEIVPSTPYDPILLRETFERAVVKRMMTDVPFGVLLSGGLDSSLVASVVNRYLAESEAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELYFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKKELHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFIEVAMSMDPEWKMIRRDLGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHADKQVPDATMLAASFIYPENTPTTKEGYLYRTIFEKFFPKNAARATVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHEASYDAVDTKVDKPKNGTL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01620 569 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Vimu6g01620 569 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Vimu6g01620 569 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Vimu6g01620 569 NCBIfam asparagine synthase (glutamine-hydrolyzing) 2 367 IPR006426 GO:0004066|GO:0006529
Vimu6g01620 569 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Vimu6g01620 569 Gene3D HUPs 197 514 IPR014729 -
Vimu6g01620 569 PANTHER ASPARAGINE SYNTHETASE 1 554 - -
Vimu6g01620 569 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Vimu6g01620 569 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Vimu6g01620 569 PIRSF Asn_synthetase_glu-h 356 516 IPR006426 GO:0004066|GO:0006529
Vimu6g01620 569 PIRSF Asn_synthetase_glu-h 1 363 IPR006426 GO:0004066|GO:0006529
Vimu6g01620 569 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 209 484 - -
Vimu6g01620 569 CDD AsnB 2 192 IPR033738 -
Vimu6g01620 569 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 514 - -
Vimu6g01620 569 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01620 Vimu-Chr6 14943548 14948124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01620 2 164 PRT Gene Family AT4G38880 25.728 1.45e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01620 K01953 - gmx:732660 1121.69