Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01616 ATGCCCAATTCCAACTCCAACCCAAAGGCAGATCCGACCCTACAATTTAACACCCAGGATCCGAATATAACTGCAAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGACCAGAATTGATTCTCTGCAACACTTCCTATCTCAATCCATCAGCACCAGCACTCCTCTCACCACCGATCAAATTGCCATGGTCTCCACCCATATCATCTCATCCATCCACCAAATCATCGTCAACGGTGCCGCCCTCGTTACTTACTCCCAACATGCCACCGCCGCCGTCACACCAGATGCGTCGTCGTATCCGAAGCCGGAACCCTCCGCCACCGATAAACACAAGCAACTCCTCGATTCAGAACTCGAACCTCCCGAGGACGGTGACGGCGTCAAAGACGACGATTGCGAAATCGTGGAGCTCGACGCCGTGGAACTCCTCGCGGAGCACATCCACTTTTGCGAGATCTGCGGGAAAGGATTCCGGCGCGACGCGAATCTCCGCATGCACATGCGAGCGCACGGAGACCAGTTCAAGACGCCGGAAGCACTGGCGAGGCCGTCAGAAACCGGAGCGGCGAAGCGCGCGATGCAGCTGCAACCGGAACAAGCTACACCGGCGGTTTCGGCCGCTGAAGTCGGCGGTGTGCTTGAAGAACCACTTCAAGCGCAGCCACTGTCCAAAGATGTACTCGTGCACCCGGTGCCACAAGAAGCACTTCTCGGTGCTTTCGGATTTGAAAAGCCACGCGAAGCACTGCGGAGAGTGCAGGTGGAAGTGCACGTGCGGGACCATGTTCTCGAGGAAGGACAAGTTGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGATAAAGGGAAGCAAGCGGCGGAGGATGATGACGAAAATCCAATCTTGAAGACTGACGGTGTATTTGAATTGGGTAATTGCTTTGGGGATGAGGAGTTGCCAGAAGGGTTTTTTGATGATTTTGGGTCCATTGATGACTACTGTTTAGAGGAAGTGTTAGGGTTTCCGAAATTTGATTTGTACGAAGAGCTAGCGGAGACAATGTTGGTGTCTTTGGAAGCGTTGGCAATGGCGGGTGCAAGTGACGTGGAATTTGGCATGGATATTGAAGAGTGGGAAAAGAAAGATTTGGAGCAGTATCCGCCATCCCATTTACTTGCCACAGAAGAAGAAAAAGACGAAGAGAAGAATAGAGTGAGAAGGTTAAAGAAGGGTCATGTTTATGGCTTTCCTACCACCCATCTTCTTCGCAATCACAACGCATGCGAATATGAGAAGGAAGAAGAACATGGTGTTGTTACCTTCACCAATATCCAACAAATGTTAGATAGAACCATGGAAGCTGTATGGTCTCAATGGTCAGGGTCAATGAAAATAATGGCCAGAACACTTCAAACATTGACCATGATCATAGGAAGCTGCATTACCTAA 1437 0.5136 MPNSNSNPKADPTLQFNTQDPNITANPQLPLQNLSQVRTRIDSLQHFLSQSISTSTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHATAAVTPDASSYPKPEPSATDKHKQLLDSELEPPEDGDGVKDDDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSETGAAKRAMQLQPEQATPAVSAAEVGGVLEEPLQAQPLSKDVLVHPVPQEALLGAFGFEKPREALRRVQVEVHVRDHVLEEGQVGHAPALACDEEDKGKQAAEDDDENPILKTDGVFELGNCFGDEELPEGFFDDFGSIDDYCLEEVLGFPKFDLYEELAETMLVSLEALAMAGASDVEFGMDIEEWEKKDLEQYPPSHLLATEEEKDEEKNRVRRLKKGHVYGFPTTHLLRNHNACEYEKEEEHGVVTFTNIQQMLDRTMEAVWSQWSGSMKIMARTLQTLTMIIGSCIT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01616 478 Coils Coil 387 407 - -
Vimu6g01616 478 MobiDBLite consensus disorder prediction 107 121 - -
Vimu6g01616 478 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 96 IPR044300 GO:0010044|GO:0010447
Vimu6g01616 478 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Vimu6g01616 478 SMART c2h2final6 151 173 IPR013087 -
Vimu6g01616 478 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Vimu6g01616 478 Gene3D Classic Zinc Finger 151 174 - -
Vimu6g01616 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Vimu6g01616 478 FunFam Zinc finger 45-like 148 174 - -
Vimu6g01616 478 MobiDBLite consensus disorder prediction 96 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01616 Vimu-Chr6 14918807 14922238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01616 125 188 C2H2 Transcription Factor Family AT1G34370 57.812 1.21e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g01616 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01616 - - gmx:100796506 256.529