Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01614 ATGGATTTGGTATTTGTTCTTTTGCTATTGACTAGTGTGTGCTCTTCTGGGTTGGCTGGGCTTGATTCACAAGTAGAAAATGCCATGGATTTTACATCTATCTGCCTTTCTGATTTTGTCGAAGTTGCAAGTGGATTTGGACTTTCAGTCTTTAATAGATGTATAATTTATATGTTCATTTCAGAAGATGCGCTGTATGCGTTGAAGTCATCATTGAATGCTTCTACCAGCCAGCTTACAAACTGGAATAAAAATCTTGTTGACCCTTGTACTTGGTCCAATGTTGAATGTGACCAGAATAACAACGTTATTCGAGTTTCACTAGAATTTATGGGATTCACAGGATCGTTGACACCAAGAATAGCATCTCTGAAAAGTCTTGAAACTCTTTCTTTGCAAGGTAATAACATCACTGGTGACATTCCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTAGATTTGGAAAACAACAAATTAACTGGTGAAATTCCCTATTCACTTGGTAATCTTAGAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTTAGTGGAACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTTAGTGGGAAGATTCCGGAGCGGTTGTTCAGCATTCCTACATACAATTTCACTGGAAATAATTTGAATTGTGGAGTGAGTTATCATCATCTTTGCTCATCTGATAATGCAGTTCAAGGTTCGTCTCATAAAACAAAAGTAGGCCTCATAGTTGGAATAGTTGCAGGTTTAGGTGTTCTTTTTTTTCTTGGTTGTCTGCTGTTCTTCTGGTACAAGGGGTGCAAGCGTGAAATTTTTGTTGATGTTCCAGGTGAGGTCGATCGCCGAATCACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATTTTAGGACAGGGAGGTTTTGGAAAAGTTTATAAAGGTATTCTAGCAGATGGTACAAAAGTTGCTGTCAAAAGGTTAACCGATTATAAAAGTGCTGCGGGTGATGCCGCGTTTCAGCGTGAAGTGGAGTTGATAAGCGTAGCTGTCCATAGGAATCTGTTACGGCTCATTGGTTTTTGTACTACTACAACTGAACGTCTCTTAGTTTATCCCTTCATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGACCTGCTCACTTTTAAATATTCAGCTGTGACATCAAATGTTAAGAAACTGCAACGGGAGAAAAGACTAGATGTCATTGTGGACTGCAACCTGAAGAAAAATTACATAATAGGAGAGGTTGAAATGATTGTACAAATTGCATTACTCTGCACACAGGCATCTCCGGAAGATCGACCAGCAATGTCAGAAGTTGTAAGAATGTTAGAGGGAGAAGGGCTTGCTGAAAGATGGGAAGAATGGCAGCATGTGGAGGTTGCTACGAGGCAAGATTACGAGAGACTACAGAGAAGAATGAACTGGGGAGAAGATTCAATGAATAACCAAGACGCCATTGAGTTGTCAGGTGGAAGATAA 1569 0.3907 MDLVFVLLLLTSVCSSGLAGLDSQVENAMDFTSICLSDFVEVASGFGLSVFNRCIIYMFISEDALYALKSSLNASTSQLTNWNKNLVDPCTWSNVECDQNNNVIRVSLEFMGFTGSLTPRIASLKSLETLSLQGNNITGDIPKEFGNLTSLVRLDLENNKLTGEIPYSLGNLRKLQFLTLSQNNLSGTIPESLASLPSLINVMLDSNDLSGKIPERLFSIPTYNFTGNNLNCGVSYHHLCSSDNAVQGSSHKTKVGLIVGIVAGLGVLFFLGCLLFFWYKGCKREIFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLTDYKSAAGDAAFQREVELISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYRLRDLLTFKYSAVTSNVKKLQREKRLDVIVDCNLKKNYIIGEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVATRQDYERLQRRMNWGEDSMNNQDAIELSGGR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01614 522 SUPERFAMILY Protein kinase-like (PK-like) 298 409 IPR011009 -
Vimu6g01614 522 FunFam Putative LRR receptor-like serine/threonine-protein kinase 60 242 - -
Vimu6g01614 522 Gene3D Ribonuclease Inhibitor 60 242 IPR032675 -
Vimu6g01614 522 FunFam Protein NSP-INTERACTING KINASE 2 408 493 - -
Vimu6g01614 522 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Vimu6g01614 522 Gene3D Phosphorylase Kinase; domain 1 287 394 - -
Vimu6g01614 522 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 407 484 - -
Vimu6g01614 522 FunFam Somatic embryogenesis receptor kinase 1 287 394 - -
Vimu6g01614 522 Pfam Leucine rich repeat N-terminal domain 63 98 IPR013210 -
Vimu6g01614 522 ProSiteProfiles Protein kinase domain profile. 318 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01614 522 Gene3D Transferase(Phosphotransferase) domain 1 399 493 - -
Vimu6g01614 522 Pfam Leucine rich repeat 123 161 IPR001611 GO:0005515
Vimu6g01614 522 Pfam Protein tyrosine and serine/threonine kinase 321 418 IPR001245 GO:0004672|GO:0006468
Vimu6g01614 522 SUPERFAMILY L domain-like 63 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01614 Vimu-Chr6 14903990 14910202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01614 418 522 Receptor kinase-like Gene Family AT5G10290 77.143 1.37e-48 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu6g01614 PK_Tyr_Ser-Thr 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01614 - - gmx:100786654 621.698