Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01598 ATGAAGAGACTTAGCAGCTCAGATTCTTCTTCCACTCCCCTCATCACAATTTGCCCATCAACAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAATTCCAATCGATGATGCTCGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGGCATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTTAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAAGAGATAATGATGCCTGACTCGGAAGACAAAACAACGATGGAACAAAGTAAGAGCGAACCGAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAAGAGCGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCCCATAACCGAACATCTGTTGCTGTCACCGGAATCTTCCTCGATGAACTGTTTGCAGTTTCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA 897 0.4794 MKRLSSSDSSSTPLITICPSTEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSEDKTTMEQSKSEPSSESEDQLNYECLNNNKKSACFGGASLFPVDFKDGSSDSDSSAILNEENPITEHLLLSPESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01598 298 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Vimu6g01598 298 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Vimu6g01598 298 MobiDBLite consensus disorder prediction 156 198 - -
Vimu6g01598 298 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Vimu6g01598 298 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Vimu6g01598 298 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Vimu6g01598 298 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Vimu6g01598 298 SMART HOX_1 59 120 IPR001356 GO:0003677
Vimu6g01598 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 276 IPR045224 GO:0003700
Vimu6g01598 298 MobiDBLite consensus disorder prediction 172 191 - -
Vimu6g01598 298 Gene3D - 55 123 - -
Vimu6g01598 298 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Vimu6g01598 298 Coils Coil 129 163 - -
Vimu6g01598 298 CDD homeodomain 61 117 IPR001356 GO:0003677
Vimu6g01598 298 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01598 Vimu-Chr6 14779643 14781082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01598 1 298 Homeobox Transcription Factor Family AT2G22430 49.057 8.61e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu6g01598 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01598 K09338 - gmx:100777924 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03983 11 61691696 61692889 Vimu6g01598 6 14779643 14781082 PCT