Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01597 TTGGTACTTACAGTAGCAAAACGTGGTGAAGAAGGAAAAAAAAAATGTACAAAAAAGAAAAAGAAAACAAGGAACAGAAACCAAGAAGGAAGTGATATTGGAGTGACTAACTGTAAGAGAACACGAAGAGCCTCTGACAAGACAAAGACCATACACTTGGCCATTGCTATAAAGCATCCTTCACTTTACTTTGCTTTCAAACAGATTAGGGTTTTCATCTTTCAATTTCATCTTTCAATTTCTTCCTATTGCTTCCTCATGAAGAAATCTTTCTACCCTAACTCCTCCCCAACGTCTCAGGCCACTCATCCCTGTCTTGATTTTCACCCACAATGGAGGCCGCGCCCATACCCGCGTGCACATGCGGCACGCGTCCACCGTCCGCCGGAGACTTATTTAAAGGTCAAGCCTTATTTTAAGGTGGAGCTCCGCCTCGGCCTCCGTCCTTCCAGCCGCGAGGACATCGAGGCCCTGATCAAAGACTGCGAGCACAAGGAGCAGTCTTTTACCTTTTACCCCGACGACGAGGTCGCTGCCGTGCTCAGTTACAAGAATTGGGAGGAGGCGTGCGACGCGGCCGCTTGGTTCTGGGAGACGCTGCTGTTGGAGAAGCACGATTATACGCCGGAGCTGGACTCCAACGCTTCGGTGACGGACAGTCTGGATGGTCGCCTTCGAGTGCTGTTCAGGAGTCACGTGATGAAGGTGATGGAGGGGAAGGAGGTTAAGCGGTGGGTGGAGGAGAGTGAACGGTTATCGAAGGAAATTGAGAGGGTTTCACGTTTGCTGAGGAATCAGAGGAATCGCTGGCATTTTAGCTGTACTAACCGCTATATTGACCAGAGGAAAGGGCTCGTTGATGAGAAAGACCAGGTTGAAAGGAGGTTGAAGGAGTTCGACTCTGCGATGGATTGTATACTGAAGCATCTGGCGGAGGGCGCTGACGTGGAGGGTGCCGACGTGGAGGATCGTCGGTGTGTGAATGTGATGAAGTTTGATGGACGTTGTGATTGGAAGCGCCTTCACTGCCTGATCAGAAGGGAGTGTCGGAGACTGGAGGATGGATTGCCCATTTATGCTTATAGGAAGGATATTCTTCGGGAGATACATGATCAGAAGAGTGAGAATGTTGTGGACAATTCCGCTGGATATCGTGGTCAAATGAGATGGAGTGAAATTGTTGACAAATGCTTTCGTATTTGTGGTTGTGTTGACCCCACAAACATTGAACTTGCTCGGAAATTGTGGCCAAATGTGGTTGCAATTATTGTGGTATTAATTGGAGAGACTGGATCTGGTAAGAGTACACAGTTAGTTCAGTTTCTAGCTGATTCTGGCATTGGTGATGATGAATCCATTGTATGCACCCAGTCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGCGGGTGTTATGAAGGGCAATCAGTCAAATGTTCTACGTTTTCATCCTTGAATGAGCTTGATTCCAGGATAATATTCACGACAGATCACTGTTTATTGCAGCACTACATGAGGAATGATAATTTGTCTGGGATCTCGTGCATCATAGTTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTCATAGGAGGGGTGATATTCGGCTTATCATTATGTCTGCTACAGCTGATGCAAACCAGCTATCTGATTACTTTGATGGTTGTAGTATTTTGCGTGTGCTTGGGAGAAGTTTTCCAGTGGATATCAAATATGCTCCTCCTGACCATGCTGGGTATTCTGGTTCTTCTGTTGTTGCCTTGGATGTTGTCAGAAAGGCAACAGAGGTTCATAGAACAGAGAAAGAGGGAACTATCCTTGCCTTTTTGACCTCTCAGTCAGAAGTAGAATATGCCTGTGAGAAGTTTAAAATAATACCCTCTGCAGTTGCCCTGCCCTTACATGGAAAACTTTCATCTGATGAGCAATCTCGTGTTTTTCATAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCGGAGACATCACTGACAATTCCTGGTGTTAAGTATGTGATTGATTCTGGTTTAGTTAAAGACTGCAGATATGATCCTGGCAGTGGGATGAATGTACTTAAGGTGTGCTGGATTAGTCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAACCTGGTGTGTGCTATAGGCTGTATTCAGAAACTGATTATCAATCAATGGACCTAAATCAAGAGCCAGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTGGCTCTGAGAGTGAAGAATATTCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAACTCTATTGATATAGCAGTCAGGAATCTAATTCAGTTAGGAGCAATTGAGATGAAAAACGATGGTCTTGATCTAACACCAGAGGGTTGGTTCCTTGCTAAATTGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTACAAACATCGTTTGGGTAGGGAAGGTCTTGTTCTAGCTGCTGTGATGGCCAATGCTTGTAGGATATTTTGCAGAGTTGGCAGTGAATTTGAAAAACAAAGATCCGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCGCTGTGTACAAGGAATGGGATGCTTTGCCTTGGGGAGAAAGGAAAGGATGGTGTTTCAAAAACAGCATCAATGCTAAGTCCATGAGGAGGTGCCAAGACACAATTTTGGAGTATGAAAGTTGCCTTGAGCGTGAACTTAAAATTGTTATTCCGAGTTATTGGCATTGGGACCCTTATACACTCTCTAGTTATGATAAGAACTTGAAGAGGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTAGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTGCATCCTTCATGTTCATTGCTTGTTTTTGCTCAGAAACCAAATTGGGTGGTTTTTGGTGAGATTCTTTCGATCTCTAATCAATATTTGGTCTGCGTGAGCACATTTGACTTTCAATCATTATATGACCTTTGCCCAGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGCAGAAGTTGCAAATGAAGACACTGTGTGGTCTTGGCTGTATTGTTCTCAAGAAATTTTGTGGAAAAGCCAACTGTAATTTGTTGGCTCTTGTTTCACGTATAAGGAAAGCTTGTTCAGAGGAGCGTATCTACATTGAAGTGAATGTTGACCAGAATGCAGTCCACTTATTTGCCACTTCAAATAATATGGATACAGCCCTTGCGTTGGTTAATGACGCTCTAGAATTTGAGAGAAAGTTGTTACGTGCCGAATGTATGGATAAGTTTTTGTATCATGGGTCTGGTCCTTCACCTATCGCATTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTATTGAGGTATGTCATGCAAACATAAATGCAATTGATGACAAGGAGCTGTTAATGTTTTTAGAGAAGAATACCTCTGGTAGCATCTGTGCTGTGCACAAATCTGCAGGCAATATGAAGGATGAAGATAAGGAAAAGTGGGGCAGGATAACTTTTACGTCCCCTGAATTTGTCAAAAGAGCCACTGAACTAGATGGACACGAATTTTGTGGCTCCTCCTTGAAAATTTTCCCTTTGCAGTTGGGAGGGGATAAAACATTTTCGTACACTGATGTTAAAGCAAAAATTTGTTGGCCTCGTAGGATTAGTAGGGGATTTGCCATAGTTAAATGTGATATAAAGGATGTCAATCATATATTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGATTGGCAAAGACCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAACAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCGGTTGGAAACCCACCATGCAGTGTTTTGGAAGAGGCACTCTTGAAGGCAATTTACCCCTCTTTGCCCAAAAGAAACCCGCACATTAGTTCTTGCCGAGTTCAGGTGTTTGTACCTGGGCCTAAGGATGCCTTTATGACAGCTTTAATCAGTTTCGATGGAAGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGAATATTGAAGGAAAGGTGTTACCTGGATGTCTACCATGGCAAAAGATAAAGTGCCAGCGGTCGTTTCAAAGCTCCTTGATATTTCCAGCACCAGTGTTTCGTGTGATTAGGGAACAACTGGATGGAGCACTTGCAAGCTTCAAGAATTTAAGAGGTCTTGAGATCGAGGAGGACAGGACATTTAATGGTTCCCACCGAGTCAAGATAACTGCAAACGCCACAAGGACAGTGGCAGATGTCAGAAGACCTCTGGAAAAACTATTAAGAGGGAAAATCATTGAGCATGACAGTCTCACTCCTGCAGTTCTCCAGCTCATGATGTCCAAGGATGGCTTTAATCTTAAAAACTCATTGGAGCAGGAGACAGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGTGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCGTGACAAGGTGATTCAATCCCTCCTTTCTCTACATGAAGAAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGATTTACCTCCTGATTTAATGAAGCAAGTGATTAAGAACTTTGGACCGGATCTGCTTGGACTGAAAGAAAGGGTACCTGGAGTAGATCTTAAGCTCAACATAAGACGCCATGTAATCAGTCTTAATGGTAGGAAGGAGTTGAAAACCAGGGTAGAGGAAATAATTTTTGAGATTGCTCGTTCATGCCATCATTTGGTTGGGACGTTTGATAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATCCATTCCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGTTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGGTACCTTCCCAATATGTTGTACTCACAAGGACTGTGGAGATCCCATCCTGCTTACAGATCTGAGATCTCTCTTATTTAGCGATAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTGTCGTGGCTAGGAGTGGGGGAACTTACAGGTTTTGTCCTTCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGACTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACATGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGCGAGAGATATAAAGAGTTCAAGGAAGATCCGGATTCATCTCTGATGGAGTGGCGCAGAGGCAAGGATGAAGTTAAGAGTTGCTTGGCGTGTGGGCATGTAATTGAGAAGGTGGATGGGTGCAACCATGTTGAGTGCAAGTGTGGAAAGCATGTGTGTTGGGTTTGCTTAGAGTTCTTCGGTGGTAGTGATGAATGTTATAGCCATTTGAGAAATGTGCACACGACTATAATATAA 5598 0.4377 MVLTVAKRGEEGKKKCTKKKKKTRNRNQEGSDIGVTNCKRTRRASDKTKTIHLAIAIKHPSLYFAFKQIRVFIFQFHLSISSYCFLMKKSFYPNSSPTSQATHPCLDFHPQWRPRPYPRAHAARVHRPPETYLKVKPYFKVELRLGLRPSSREDIEALIKDCEHKEQSFTFYPDDEVAAVLSYKNWEEACDAAAWFWETLLLEKHDYTPELDSNASVTDSLDGRLRVLFRSHVMKVMEGKEVKRWVEESERLSKEIERVSRLLRNQRNRWHFSCTNRYIDQRKGLVDEKDQVERRLKEFDSAMDCILKHLAEGADVEGADVEDRRCVNVMKFDGRCDWKRLHCLIRRECRRLEDGLPIYAYRKDILREIHDQKSENVVDNSAGYRGQMRWSEIVDKCFRICGCVDPTNIELARKLWPNVVAIIVVLIGETGSGKSTQLVQFLADSGIGDDESIVCTQSRKIAAKSVAQRVQEESSGCYEGQSVKCSTFSSLNELDSRIIFTTDHCLLQHYMRNDNLSGISCIIVDEAHERSLNTDLLMTLLKNLLHRRGDIRLIIMSATADANQLSDYFDGCSILRVLGRSFPVDIKYAPPDHAGYSGSSVVALDVVRKATEVHRTEKEGTILAFLTSQSEVEYACEKFKIIPSAVALPLHGKLSSDEQSRVFHNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALRVKNIQDFDFVDAPSSNSIDIAVRNLIQLGAIEMKNDGLDLTPEGWFLAKLGIEPRLGKLILGCYKHRLGREGLVLAAVMANACRIFCRVGSEFEKQRSDCLKVQFCHCDGDLFTLLAVYKEWDALPWGERKGWCFKNSINAKSMRRCQDTILEYESCLERELKIVIPSYWHWDPYTLSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPNWVVFGEILSISNQYLVCVSTFDFQSLYDLCPAPLFDVSKMVEQKLQMKTLCGLGCIVLKKFCGKANCNLLALVSRIRKACSEERIYIEVNVDQNAVHLFATSNNMDTALALVNDALEFERKLLRAECMDKFLYHGSGPSPIALFGSGAEIKHLELEKRSLSIEVCHANINAIDDKELLMFLEKNTSGSICAVHKSAGNMKDEDKEKWGRITFTSPEFVKRATELDGHEFCGSSLKIFPLQLGGDKTFSYTDVKAKICWPRRISRGFAIVKCDIKDVNHILRDFYNLAIGGRYVRCEVGKKSMDSVVINGIGKDLSEAEILDVLRTATNRRILDFFLVRGDAVGNPPCSVLEEALLKAIYPSLPKRNPHISSCRVQVFVPGPKDAFMTALISFDGRLHLEAAKALENIEGKVLPGCLPWQKIKCQRSFQSSLIFPAPVFRVIREQLDGALASFKNLRGLEIEEDRTFNGSHRVKITANATRTVADVRRPLEKLLRGKIIEHDSLTPAVLQLMMSKDGFNLKNSLEQETGTYILFDRHNLNLRVFGSPNKVALARDKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQVIKNFGPDLLGLKERVPGVDLKLNIRRHVISLNGRKELKTRVEEIIFEIARSCHHLVGTFDNDGPNCPICLCEVEDPFQLEGCGHLFCRLCLVEQCESAIKNQGTFPICCTHKDCGDPILLTDLRSLLFSDKLEELFRASLGAVVARSGGTYRFCPSPDCPSIYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLMEWRRGKDEVKSCLACGHVIEKVDGCNHVECKCGKHVCWVCLEFFGGSDECYSHLRNVHTTII 1865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01597 1865 SUPERFAMILY RING/U-box 1652 1718 - -
Vimu6g01597 1865 Coils Coil 282 302 - -
Vimu6g01597 1865 Gene3D - 1766 1863 - -
Vimu6g01597 1865 Gene3D - 581 751 IPR027417 -
Vimu6g01597 1865 CDD DEXHc_RHA-like 423 577 - -
Vimu6g01597 1865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1652 1732 IPR013083 -
Vimu6g01597 1865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 605 772 IPR001650 -
Vimu6g01597 1865 CDD SF2_C_RHA 582 740 - -
Vimu6g01597 1865 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 956 1035 IPR011709 -
Vimu6g01597 1865 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g01597 1865 CDD Rcat_RBR_DEAH12-like 1812 1861 - -
Vimu6g01597 1865 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1651 1733 - -
Vimu6g01597 1865 CDD BRcat_RBR 1740 1791 - -
Vimu6g01597 1865 Pfam Helicase associated domain (HA2) 793 887 IPR007502 GO:0004386
Vimu6g01597 1865 SUPERFAMILY RING/U-box 1739 1794 - -
Vimu6g01597 1865 Gene3D - 776 881 - -
Vimu6g01597 1865 SMART helicmild6 633 732 IPR001650 -
Vimu6g01597 1865 SMART ultradead3 402 587 IPR014001 -
Vimu6g01597 1865 SUPERFAMILY RING/U-box 1810 1858 - -
Vimu6g01597 1865 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 581 751 - -
Vimu6g01597 1865 Gene3D - 341 580 IPR027417 -
Vimu6g01597 1865 PANTHER ATP-DEPENDENT RNA HELICASE 322 1038 - -
Vimu6g01597 1865 SMART ibrneu5 1789 1853 IPR002867 GO:0008270
Vimu6g01597 1865 SMART ibrneu5 1723 1788 IPR002867 GO:0008270
Vimu6g01597 1865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 415 578 IPR014001 -
Vimu6g01597 1865 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 520 529 IPR002464 -
Vimu6g01597 1865 ProSiteProfiles Zinc finger RING-type profile. 1656 1698 IPR001841 -
Vimu6g01597 1865 Coils Coil 242 269 - -
Vimu6g01597 1865 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1784 1862 - -
Vimu6g01597 1865 ProSitePatterns Zinc finger C2H2 type domain signature. 1840 1861 IPR013087 -
Vimu6g01597 1865 SMART ha2_5 792 888 IPR007502 GO:0004386
Vimu6g01597 1865 Pfam DEAD/DEAH box helicase 424 563 IPR011545 GO:0003676|GO:0005524
Vimu6g01597 1865 FunFam RBR-type E3 ubiquitin transferase 775 881 - -
Vimu6g01597 1865 Pfam IBR domain, a half RING-finger domain 1737 1788 IPR002867 GO:0008270
Vimu6g01597 1865 ProSitePatterns Zinc finger RING-type signature. 1672 1681 IPR017907 -
Vimu6g01597 1865 ProSiteProfiles TRIAD supradomain profile. 1652 1860 IPR044066 -
Vimu6g01597 1865 Pfam Helicase conserved C-terminal domain 614 731 IPR001650 -
Vimu6g01597 1865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 896 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01597 Vimu-Chr6 14741111 14748332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01597 1672 1857 ARIADNE family AT3G27710 29.630 1.94e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01597 K12818 - gmx:100810008 2721.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01597 6 14741111 14748332 Vimu6g01597 6 14741111 14748332 ECH