Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01595 ATGACGAGTTTCCATTCTAGAAAACTATGTTTTCCCTTTCATGGCTCAATCGATGTTGCTACCATGAATAGGAGAATCAGAACCAGTTACAGTCCAATAGCTTCTCCTCTTCCCTCAGTAATTCCACGTTCATTTCCGTGGTTTTCACGACCCCTCCTTGATGGAGAACACGACAACCTAAACCTTGCATCCATCATTATAATCGGCCTAGGTAGCACAGCTTGTGTAATTATGTTTCTCATCACCTTGTCCAAAATCCTAAAGATCTATTATTTAAATAGATACAACGTTAGCAGAAGAAACCCTCCAATATTATTTGACGTTCGAGGAGATTCTCCTCCCTTTTCCGATGACGAGGAACACTCCATACGGTTCAGCCCCACAGAGGGTCTCCAGCAATCAACCATAGACTCCATCACAGTTTACAGATACAGAAATAACCAAGTTTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTTGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTGTTGCCAAAGTGTAGCCATGCTTTCCACGTCCCTTGCATTGATACTTGGTTGAGGTCACATAAAACTTGTCCCTTGTGCCGCACCCCTATTGTTCACGATGCTGTCAGTGTTGATGGTGAAACTGAGTCTGATTCAAGTGTTTCTGATATAATCCATGACATGGAAGAATGCGATGGTAGTGGTGTTGTGAGGGTTGGTGATGGAATTGAAATTTTGTCTGAATTTGGTGAGGTGAATGGTGATTCTTCAGCTCCAATTAGTCGTGCTTCTGATGCTGATACACAGACACAAGAATTTGATGATGAAAATGACAGACCAAGATTCTCCGTGGATTCATATGTTTTGTTTCTCCAATATACAAAGCTTAGACAGACCAAGATTGGTGATTGA 903 0.4164 MTSFHSRKLCFPFHGSIDVATMNRRIRTSYSPIASPLPSVIPRSFPWFSRPLLDGEHDNLNLASIIIIGLGSTACVIMFLITLSKILKIYYLNRYNVSRRNPPILFDVRGDSPPFSDDEEHSIRFSPTEGLQQSTIDSITVYRYRNNQVLVKETECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLRSHKTCPLCRTPIVHDAVSVDGETESDSSVSDIIHDMEECDGSGVVRVGDGIEILSEFGEVNGDSSAPISRASDADTQTQEFDDENDRPRFSVDSYVLFLQYTKLRQTKIGD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01595 300 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 62 204 IPR044675 -
Vimu6g01595 300 SMART ring_2 156 197 IPR001841 -
Vimu6g01595 300 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Vimu6g01595 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 206 IPR013083 -
Vimu6g01595 300 FunFam E3 ubiquitin-protein ligase ATL6 119 204 - -
Vimu6g01595 300 CDD RING-H2_EL5-like 155 198 - -
Vimu6g01595 300 Pfam Ring finger domain 155 198 IPR001841 -
Vimu6g01595 300 MobiDBLite consensus disorder prediction 251 276 - -
Vimu6g01595 300 SUPERFAMILY RING/U-box 140 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01595 Vimu-Chr6 14735872 14737369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01595 121 217 C3H Transcription Factor Family AT5G10380 50.485 3.31e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01595 - - vun:114181230 399.823