Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01592 CTCTCTCATCCCATAGAGCTAAAACGTAACTCTGAACATGTTTTTGTAGCTCATGTCACTTCCTTCTCTTTCAAACATCATTTTCTTCACCAACCCTTCAAACTTTCACTTCTTCAACACATCTGCGTACATTCTGCACACACGTTCATGGAGATGGGTGTGCACCATGTGCTCATTCTGCTGCTGTCTCTCTGCAGTTCCTTAGAGTGTGTGAATGCTCAGTGGAATCCATTAAGCCCTGCCACCTACGAGGAGATGAACCGTAGTGACAACTTGAAGGCCTCACTCAGTCTCTCCTTCTCCTGTGTCTCCATTGGCTTCTTCTTGTTCCTTTTCTTCAAAATCCGCTCGCGTTTTTCCCCCATCAAGCCCCTCTCTAAAAGAACCGCCGAAGCAATCCAAACATGTCCCACCTTCCATTTCTCCCAGATGAAGGAGCTCGGCCTGGGGAATGGGGCAGAGGAGTGCGCCGTGTGCTTGCTGGAGTTCGAAGACTCCGACACCGTGAAGATGCTGCCGCTCTGCCAACATGTTTTCCACCAGCATTGCATCGATCAATGGCTACCCTCTCGCCTCACGTGCCCCATTTGTCGCCAGAAGCTTATATCCGATGATACTGAAGCAAACATCACGGATGTCCCATCGGAACAAGAACGAGAAGAAGAAGAAGAAAATGGTGACACTGCAGAGTTTACTGAGGTGGCAATAACTGCAGCAACGGAACAACATGAACATGAAACTGAAGCTGATAACGCTGTGGGATAG 765 0.4863 LSHPIELKRNSEHVFVAHVTSFSFKHHFLHQPFKLSLLQHICVHSAHTFMEMGVHHVLILLLSLCSSLECVNAQWNPLSPATYEEMNRSDNLKASLSLSFSCVSIGFFLFLFFKIRSRFSPIKPLSKRTAEAIQTCPTFHFSQMKELGLGNGAEECAVCLLEFEDSDTVKMLPLCQHVFHQHCIDQWLPSRLTCPICRQKLISDDTEANITDVPSEQEREEEEENGDTAEFTEVAITAATEQHEHETEADNAVG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01592 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 204 IPR013083 -
Vimu6g01592 254 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Vimu6g01592 254 FunFam E3 ubiquitin-protein ligase ATL6 123 204 - -
Vimu6g01592 254 MobiDBLite consensus disorder prediction 208 254 - -
Vimu6g01592 254 Pfam Ring finger domain 155 198 IPR001841 -
Vimu6g01592 254 CDD RING-H2_EL5-like 155 198 - -
Vimu6g01592 254 SMART ring_2 156 197 IPR001841 -
Vimu6g01592 254 MobiDBLite consensus disorder prediction 239 254 - -
Vimu6g01592 254 SUPERFAMILY RING/U-box 155 204 - -
Vimu6g01592 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 103 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01592 Vimu-Chr6 14720718 14721588 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01592 122 254 Rapid Response to Elicitors AT2G35000 37.063 2.39e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01592 K10664 - gmx:100804862 181.415