Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01586 ATGGGTCTTTCAAATTTTCCAAGTGCATCAGAAGGGGTGCTTCCTGTGCTGGTGATAAACACTGTTCTCTCAGTGGCTGTGTTGAAGAACATGTTTAGATCCATGGTCCAAGTTGTGGGAGGCAGTCCAAGTCCAAGTTCCGGTGGGAACAGCGAACAGGAATCTCATGAAAGTTCACGAGAAAGGAGGGTGTCGATAACTCAGTTCAAGGCATTGTGGAAGGACATAGGAAGAAGAAGCAGTGACAGTGGATGGAAGGGTGTGACCATGGTTGAGTGCTGCGTTTGCTTGTGTCGTTTTGAAGGCAATGAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGCTGCTTGGACAAATGGTTTGATAACAAACACGCCTCATGCCCTTTGTGTCGTTCCATGGATTAG 417 0.4724 MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMVQVVGGSPSPSSGGNSEQESHESSRERRVSITQFKALWKDIGRRSSDSGWKGVTMVECCVCLCRFEGNEEVSELPCKHYFHRGCLDKWFDNKHASCPLCRSMD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01586 138 MobiDBLite consensus disorder prediction 40 63 - -
Vimu6g01586 138 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Vimu6g01586 138 SUPERFAMILY RING/U-box 92 136 - -
Vimu6g01586 138 SMART ring_2 93 134 IPR001841 -
Vimu6g01586 138 CDD RING-H2_PA-TM-RING 92 135 - -
Vimu6g01586 138 PANTHER - 1 137 IPR044249 -
Vimu6g01586 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 138 IPR013083 -
Vimu6g01586 138 SMART ringv_2 92 135 IPR011016 GO:0008270
Vimu6g01586 138 Pfam Ring finger domain 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01586 Vimu-Chr6 14701350 14702961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01586 1 136 C3H Transcription Factor Family AT2G04240 34.615 3.08e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01586 K16285 - gmx:100811790 186.422