Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01575 ATGGGTAGCAAAGGTGGAATTTTCCGTTATGCAGATGGAGTTGACAAATTTCTGTTACTGTTTGGGACACTGGGTTGCATTGGAGGTGGATTACAAACACCTATGACAATGCTTGTTCTTGGTAGTTTGATAAATGATTATGAAGGTGGATCTGAACATTCCGTGCCCGACCAGGTTATAGACAAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAACTGAATACCTTAAATCAGTCCTAAGGCAAGAGGTTGGTTTCTTCGACAAGCAAACCGACTCTTCCACAACTTTCAAAGTTATTGCTACCATAACTTCTGATGCTCAAACAATCCAAGATACCATGGCTGATAAGGTGCCCAATTGTCTGGGTCACCTCTCAGCATTTCTCTCTAGCTTTATAGTGGCACTCTTCCTTTCATGGAGACTTGCAGTGGCTGCTTTTCCATTTTCAATCATGATGATCATGCCGGCAATCATATTTGGGAAGGCCATGAAAGAGCTGGGACATAAAATGAAGGATGCATATGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCTTCAATTCACACTGTTTATTCATATGTGGGCGAGAAGCAAACAATGCAAGCGTTCAACTCGAGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTGATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGCAGTGTTCTGGTCAGGACAAAAGGAGAAAGTGGTGGTCCTGTGTTTTGTGCAGAGATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTACTACCCGGATTTTTGAGATGATTGATCGAGTGCCAAGCCTAAATTCTTACAGAGAAAAAGGAAAGGTCTTAACACATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACTGATTCTCCAAGGACTTAATCTGAAGGTGCAGGCAGGAAAAACACTAGGCTTAGTTGGAGGGAGTGGTTCAGGCAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTACGGCGAGATATTGCTTGATGGATATGATATACAGACACTTCACGTTAAGTGGTTAAGGTCCCAGATGGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAAAACATTCTATTTGGAAAGGAAGGAGCTTCAATGGATGGAGTTATAAGGGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTGATGGATATGAAACTCAAGTGGGACAATTCGGTGCTCAGTTGTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTGATAAGAGAACCCAAAATCCTACTACTTGATGAAGCAACAAGTGCTTTGGATTCACAGTCCGAAAGACTAGTGCAGGAGGCCCTTGAGAAAGCTTCTAGAGGCAGGACAACAATCATCATAGCGCATCGCCTGTCAACAATTCGTAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTCGTTGAATGTGGTTCCCATGATGAGCTACTCCATCTGAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTGCAACAAGGGACAAGTCAAAACGAAATTGCATTGCATACAATAAACAAGACTTCCTTAGCTATGGAAAATCTTAAAAGTCCAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCATTTAGCTCAACACAACCATTTAGTTCCATATATTCAATCAGTGTTGTAGGGTCTAGCTTTGATGACTACGACAGGGAAAACTTTGAGAAATCTTCACATGCTAACTTCTCTCAATGGCGTTTACTAAGAATGAATTCCCCTGAGTGGAAACATGCTTTGCTTGGTTGTTTAGGGGCCATTGGCTCTGGAATATGTCAACCGATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATGACTCTCTCATCAAATCAAAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATTGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAACATTACAATTTTACCATTATGGGGGAGAGTTTGCTAAAAAGGGTGCGAGAAAATTTGCTAGAGAAGGTGTTGACTTTTGAGATGGGATGGTTTGATCAAGAGGAGAACGGAAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTCAAATCCCTTGTTGCAGAACGAATGTCATTGATAGTTAATATTTCTGTTATGGCTCTGTTGGCTTTTGTACTTAGTTTAATTGTTACGTGGAGGGTGGCAATAGTCATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAGTATGGCAGGGAAAGCAAGAAGGGCTCAGAGAGAAGGTAGTCAATTAGCAATGGAAGCTACTGTTAACCACAGGACTATTGCTGCATTTTCATCTGAGAAAAGGATTTTAAACTTGTTCAGAACTTCTATGGAGGGCCCTAAGAAGGAAAGCATCAAGCAATCATGGATTTCGGGTTCCATTTTGTCAGTCTCATATTTTGTAACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGCCGGTTATTGAATCGAAAGCTGGTGGATTCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATCGCAGAGACAGCAAGTGCAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCTATACTGGATAGGAAAAGTGAGATTGAACCGGAAGATCCTAGACATAGAAAGTGTAAAAATTCTTTGAAGGGCCATATAAAACTTAGAGATGTCTTTTTCTCGTACCCAACAAGGCCAGACCAAATGATTCTCAAGGGCCTCAATCTTGATATTGAAGCAGGCAAAACAGTTGCATTAGTGGGACAAAGTGGCTCGGGTAAATCAACCATCATTGGCTTAATCGAAAGATTTTATGACCCCATGAAGGGATCCATATGCATAGACAATTGTGACATAAGGGAATTTAACTTAAGAAGTTTGAGAGCACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTTTCAATGAAAGATGGATACGATACTTACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGAATAGCCATTGCTCGAGCAGTACTTAAGAATCCTTCAATCCTTCTGTTAGATGAGGCAACAAGTGCTCTAGACAGTGTATCAGAAAATCTGGTGCAGGAGGCACTGGAGAAAATGATGGTTGGAAGAACGTGTGTGGTTATAGCTCACCGTTTGTCAACAATACAGAACGTTGACTCCATAGTAGTTATTCAAAATGGGAAGGTGGTGGAACAAGGATCACACTCGGAGTTGTTGAGAATTGGATCAAATGGGGCCTATTACTCCTTGACTAGGCTACAACAAGACCACTCAACATGA 3657 0.4165 MGSKGGIFRYADGVDKFLLLFGTLGCIGGGLQTPMTMLVLGSLINDYEGGSEHSVPDQVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSTTFKVIATITSDAQTIQDTMADKVPNCLGHLSAFLSSFIVALFLSWRLAVAAFPFSIMMIMPAIIFGKAMKELGHKMKDAYGVAGSIAEQAISSIHTVYSYVGEKQTMQAFNSSLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIATTRIFEMIDRVPSLNSYREKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHVKWLRSQMGLVNQEPILFATSIRENILFGKEGASMDGVIRAAKAANAHDFIVKLPDGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALEKASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLHLNNGQGGAYRKMLQLQQGTSQNEIALHTINKTSLAMENLKSPNSRWQSSPTHHAFSSTQPFSSIYSISVVGSSFDDYDRENFEKSSHANFSQWRLLRMNSPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSLIKSKIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDQEENGSAAICARLATEANLVKSLVAERMSLIVNISVMALLAFVLSLIVTWRVAIVMIAMQPLIIACFYSKNILMKSMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILSVSYFVTTASITLTFWYGGRLLNRKLVDSKHLLQVFLILMGTGRQIAETASATSDIAKSGRAISSVFAILDRKSEIEPEDPRHRKCKNSLKGHIKLRDVFFSYPTRPDQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSICIDNCDIREFNLRSLRAHIALVSQEPTLFAGTIRDNIVSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQNVDSIVVIQNGKVVEQGSHSELLRIGSNGAYYSLTRLQQDHST 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01575 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Vimu6g01575 1218 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1210 IPR003439 GO:0005524
Vimu6g01575 1218 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Vimu6g01575 1218 SMART AAA_5 1026 1187 IPR003593 GO:0016887
Vimu6g01575 1218 SMART AAA_5 371 557 IPR003593 GO:0016887
Vimu6g01575 1218 Gene3D - 989 1097 IPR027417 -
Vimu6g01575 1218 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Vimu6g01575 1218 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Vimu6g01575 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1213 IPR027417 -
Vimu6g01575 1218 ProSitePatterns ABC transporters family signature. 1113 1127 IPR017871 GO:0005524|GO:0016887
Vimu6g01575 1218 FunFam ABC transporter B family member 4 334 592 - -
Vimu6g01575 1218 SUPERFAMILY ABC transporter transmembrane region 663 983 IPR036640 GO:0005524|GO:0016020
Vimu6g01575 1218 Gene3D - 1098 1214 IPR027417 -
Vimu6g01575 1218 Gene3D - 334 586 IPR027417 -
Vimu6g01575 1218 CDD ABC_MTABC3_MDL1_MDL2 999 1213 - -
Vimu6g01575 1218 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01575 1218 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 284 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01575 1218 Pfam ABC transporter transmembrane region 677 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01575 1218 Pfam ABC transporter transmembrane region 20 275 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01575 1218 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Vimu6g01575 1218 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Vimu6g01575 1218 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016020
Vimu6g01575 1218 Gene3D ABC transporter type 1, transmembrane domain 653 977 IPR036640 GO:0005524|GO:0016020
Vimu6g01575 1218 PANTHER ABC TRANSPORTER B FAMILY 7 688 IPR039421 -
Vimu6g01575 1218 Gene3D ABC transporter type 1, transmembrane domain 7 609 IPR036640 GO:0005524|GO:0016020
Vimu6g01575 1218 Pfam ABC transporter 1017 1141 IPR003439 GO:0005524
Vimu6g01575 1218 Pfam ABC transporter 362 511 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01575 Vimu-Chr6 14634870 14640496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01575 20 595 Calmodulin-binding Proteins AT2G36910 35.972 9.32e-104 355