Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01567 ATGGCATTTTCATTCACTTTTACATTCCACCTTTTGCTTCTTGTCCCATCTGTGGTTTATGTTTCTACTTCTCCTGTTCAAGATCCTGAATTAGTGGTCCAGGAAGTGGAAAAGAGCATTAATGGGTCAAGGAGAAAGTTGGGGTACCTTTCTTGTGGTACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAACTGGGAAAGGAATCGTAAGCGTTTAGCTAGTTGTGGTATTGGGTTCGGCAAGAATGCCATTGGTGGAAGAGATGGGAAACTATACGTGGTGACTGACCCCAGTGATAACCCTATGAACCCTAAACCAGGTACATTGAGACATGGTGTTATCCAAGAAGAGCCTTTGTGGATTATTTTCAAGCGTGACATGGTGATCAAGCTACGCATGGATCTCCTTGTTAATTCTTACAAAACCATTGACGGAAGAGGAGCAACTATCCACATTGCTGGAGGGCCTTGCATTAAAGTGCACAACAAGAGGAATATCATAATTCATGGCATACACATTCATCATTGCAAACGAGGTGGGAGTGGATATGTCACTGATTTTCCTAACCATCGCACTTGGAGTGCAAGATCGGACGGTGATGGGATCACAATCTCTGGTGGGAGTCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTGATTGATGTTGTTCATGGTTCAACGGCCATCACCATTTCCAACAATTACATGACACACCATAACAAAGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGCTGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAAGGGCTGGGAGGAAGAATGCCTAGATGCAGGTTTGGATACTTTCATGTGGTGAACAACGATTACATACATTGGCAGCATTACGCAATAGGTGGAAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATGATGAAGACCATAAAGAGGTGACCAAACATTTTAAATCGTCAGAAGGAGAATGGAAGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGCGCCTTCTTCACACCGTCCGGGGCAGGAGCAACAGCTAGATATGATAGAGCGTCAAGCATGGCAGCAAGACCACCTCTACTTGTGCCTTCAATGACGGCAGGGGCTGGTGCACTTAGATGCAAAAATGGCAACCTGTGCGGACACTAG 1218 0.4499 MAFSFTFTFHLLLLVPSVVYVSTSPVQDPELVVQEVEKSINGSRRKLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCGIGFGKNAIGGRDGKLYVVTDPSDNPMNPKPGTLRHGVIQEEPLWIIFKRDMVIKLRMDLLVNSYKTIDGRGATIHIAGGPCIKVHNKRNIIIHGIHIHHCKRGGSGYVTDFPNHRTWSARSDGDGITISGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKADKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYIHWQHYAIGGSSSPTIFSQGNRFLAPNDEDHKEVTKHFKSSEGEWKKWNWRSEGDLMLNGAFFTPSGAGATARYDRASSMAARPPLLVPSMTAGAGALRCKNGNLCGH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01567 405 Gene3D - 55 396 IPR012334 -
Vimu6g01567 405 PANTHER PECTATE LYASE 18-RELATED 27 400 IPR045032 GO:0030570
Vimu6g01567 405 FunFam Pectate lyase 55 396 - -
Vimu6g01567 405 SUPERFAMILY Pectin lyase-like 39 397 IPR011050 -
Vimu6g01567 405 SMART amb_all 129 326 IPR002022 -
Vimu6g01567 405 Pfam Pectate lyase 138 320 IPR002022 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vimu6g01567 405 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01567 Vimu-Chr6 14600715 14602656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01567 3 403 Polysaccharide Lyase AT5G63180 68.227 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01567 K01728 - gmx:100801136 740.339