Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01566 ATGGAAATTCTAATTCCGCTGTCATTTATGTTACTCTTTCTGCTGCTTGTACCTTCCTGCATTTGTTCTTCCCCACTTCAAGATCCTGAACTAGTGGTGGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTCTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGTGATGCCAATTGGGAAAAGAATCGGAAGAATTTAGCTGAGTGTTCCATTGGGTTTGGTAAGCATGCAATTGGAGGGAGGGATGGTAAAATATATGTGGTGACTGATCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAACCACTGTGGATCATTTTCCAGCGTGACATGGTGATCAAGCTGAAGCAAGAGCTTATGATGAACTCTTTCAAGACCATAGATGGTAGAGGGGTAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGAGCAATATTATCATTCATGGGATTAACATCCATGACTGCAAACAAGGAGGGAATGCCTATGTGAGAGACTCCCCTACACACTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATCTCCATCTTTGGTGGGAGCCATGTTTGGGTGGATCACTGTTCTCTCTCCAATTGCCGTGATGGGCTGATTGATGCCATCCATGGATCCACTGCCATTACCATATCCAACAATTACTTGACCCACCACAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTACAGAGAATGCCAAGATGTAGGTATGGATACTTCCATGTGGTGAACAATGATTACACCCAATGGAAAATGTATGCCATAGGAGGGAGTGCTTCCCCAACAATCAATAGCCAAGGGAATAGATTTTTTGCTCCTAATGACCATACATTCAAAGAGGTGACAAAGAGGGAGAATGCAGCACAGAGCAAATGGAAGAATTGGAATTGGAGGTCAACGGGAGATTTGATGCTAAACGGTGCGTTTTTCACTGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCCAGTTTGGCAGCAAAACCATCTTCACTCGTCAGTTCTTTAACAGCATCAGCTGGATCACTTAGATGTAGAAAGGGTTCACGTTGCTGA 1212 0.4488 MEILIPLSFMLLFLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWEKNRKNLAECSIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFQRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVSNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWKMYAIGGSASPTINSQGNRFFAPNDHTFKEVTKRENAAQSKWKNWNWRSTGDLMLNGAFFTASGAGASSSYARASSLAAKPSSLVSSLTASAGSLRCRKGSRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01566 403 Gene3D - 55 396 IPR012334 -
Vimu6g01566 403 Pfam Pectate lyase 137 320 IPR002022 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vimu6g01566 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vimu6g01566 403 FunFam Pectate lyase 55 396 - -
Vimu6g01566 403 PANTHER PECTATE LYASE 18-RELATED 28 401 IPR045032 GO:0030570
Vimu6g01566 403 SMART amb_all 129 326 IPR002022 -
Vimu6g01566 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01566 Vimu-Chr6 14595326 14598060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01566 7 403 Polysaccharide Lyase AT5G63180 76.238 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01566 K01728 - gmx:100782388 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01566 6 14595326 14598060 Vimu6g01566 6 14595326 14598060 ECH
Vimu6g01566 6 14595326 14598060 Vimu7g00570 7 5781651 5783686 ECH
Vimu6g01566 6 14595326 14598060 Vimu10g01365 10 14359307 14362494 ECH