Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01558 ATGGAGGGGTTGGACAGGTTTCTTGTGGCAACAAGCACCATAGGCTTCATTTGTGTGTGCAAGGTGTTTGTCAAATTTCTCAAGTGGGTGTGGGTGATGTTCTTGAGGCCACCAAAGAACCTCAAAGAATATGGTTCCTGGGCTATAATCACTGGATCCACTGATGGAATTGGCAAGGCCATGGCTTTTGAATTCGCATCCAAGGGACTCAACCTTCTCTTGGTTGGTCGAAACCCTCTGAAACTTGAGACGACATTGAAGGAAATAAGAGAGAGACACGGTGTTCAGGTCAAGTTTGTGGTCATAGATATGCAGAAAGTTAGTGGAGAGGAAATCGCTAAGAGAATAGAGGAAGCAATAGATGGTTTGGATGTGGGTTTGCTTGTTAATGGTGCTGGTTTGGCTTACCCTTATGCAAGATTCTTTCATGAAGTTGATTTGGAGCTTATGGATGCTATTGTGAAAGTGAATGTGGAGGCAACAACTTGGATCACAAAGGCCGTGATTCCATCCATGCTCAAGAAGAAAAAGGGTGCTATAGTGAACATTGGTTCTGGTTCTTCTGTGGTGCTTCCTTCATACCCTCTAGTCACTCTCTATGCTGCTACAAAAGGATACCTAGCCATGTTCTCCAGATGCATCAGTTTGGAGTATAAGCATCAAGGAATTGATATCCAGTGTCAGGTTCCATTATATGTGTCAACCAAAATGACCAAAATGAAGAGATCAGCTTTTGTGCCAACACCAGAATTGTACAGCAAAACATGCACAAGGTGGATTGGGTATGAAAAACTGGTTGAGCCATACTTTCTTCATTCTGTGCAAGGTTTTCTCATAAGAGCAATTCCTCATGCACTCATGGATTCCTACATGTTACGATATTTTCTTTATTTTCGTGCAAAAGGACTCTCCAAGGACTCCAACAAGGCTAAAAAAACATCATTAGCTGCATCTGATTCCCAAGAACCAAACATCATTAATCAAGATTACAGTACAAATTACTAA 1005 0.4179 MEGLDRFLVATSTIGFICVCKVFVKFLKWVWVMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFEFASKGLNLLLVGRNPLKLETTLKEIRERHGVQVKFVVIDMQKVSGEEIAKRIEEAIDGLDVGLLVNGAGLAYPYARFFHEVDLELMDAIVKVNVEATTWITKAVIPSMLKKKKGAIVNIGSGSSVVLPSYPLVTLYAATKGYLAMFSRCISLEYKHQGIDIQCQVPLYVSTKMTKMKRSAFVPTPELYSKTCTRWIGYEKLVEPYFLHSVQGFLIRAIPHALMDSYMLRYFLYFRAKGLSKDSNKAKKTSLAASDSQEPNIINQDYSTNY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01558 334 PIRSF 11-beta-HSD1 2 305 - -
Vimu6g01558 334 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 267 - -
Vimu6g01558 334 Pfam short chain dehydrogenase 47 242 IPR002347 -
Vimu6g01558 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 299 IPR036291 -
Vimu6g01558 334 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Vimu6g01558 334 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vimu6g01558 334 PRINTS Glucose/ribitol dehydrogenase family signature 123 134 IPR002347 -
Vimu6g01558 334 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Vimu6g01558 334 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Vimu6g01558 334 CDD 17beta-HSD1_like_SDR_c 45 283 - -
Vimu6g01558 334 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Vimu6g01558 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 IPR002347 -
Vimu6g01558 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Vimu6g01558 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Vimu6g01558 334 PANTHER RH59310P 8 310 - -
Vimu6g01558 334 Gene3D - 41 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01558 Vimu-Chr6 14566252 14568182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01558 14 309 Lipid Metabolism Gene Families AT1G67730 51.333 1.24e-111 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01558 K10251 - gmx:100816067 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01558 6 14566252 14568182 Vimu6g01558 6 14566252 14568182 ECH
Vimu11g03871 11 60791156 60793870 Vimu6g01558 6 14566252 14568182 PCT