Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01553 ATGCTTCTTCTTGTGCTGAGATCACATGTTCTTTGCCAACTTGAAGAGTTTATCAGTATTGACTGCGGAGGGACAAGTAACTACACTGATAAAGGAACGGGGCTTTCATGGATATCAGATTCTGGGATGATGAAACATGGGAAATCAGTGTTGGTACAAAATCCTAGAGAAAACAAGGTTCAGTATCAGAGACGCAGAGACTTTCCAATTGACAGCAGAAAATACTGTTATACACTTGGTTCTGAGCAGAGAAGAAGGTATCTAGTGCGAGCAACGTTTCAGTATGGTATCTTGGATGATGGTGACACATACCCTCAGTTTCAGCTATATTTGGATGCAACAAAATGGGCTACTGTGTCAATATATGATGCCACAAGAACTTATGTGAAGGAAATGATCTTCAGGGCACCCTCAAACTCCATTGATGTTTGCGTGTGCTGTGCTACCACTGGTTCTCCTTTCATATCTACCCTTGAACTAAGGCCCTTGAATCTTTCTATGTATGCCACAGATTTTGAGAGCAGTTTCTTCTTGAAAGTGGCTGCAAGAATTAACTTTGGTGCTCCAAGTGAGGATGTAGTCAGGTCTGGCACTGAAAGAATTAATACAACAAAGAAAATAGAAATAGAGACAAGAGAATACCCACCTGTTAAAGTGATGCAGACTGCAGTTGTTGGCACAAAAGGAGTCCTTAGCTATAGACTAAACCTAGAAGACTTCCCTGGAAATGCTAGAGCTTATGCATATTTTGCAGAGATTGAAGATCTGGCTAAGAATGAGACTAGAAAATTCAAATTGGAGCAACCTTACATAGCTGACTATAGTAACGCAGTGGTGAACATAGCTGAGAATGCCAATGGGACCTACACTCTTTATGAACCAAGTTATATGAACGTGAGTCTTGAGTTTGTGCTTTCGTTCTCCTTTGTTAAGACCAGGGATTCTACTCAAGGACCTCTTCTAAACGCAATGGAAATAAGCAAATACGTGCAAATTGCTTCGAAGACTGACAGACAAGATTCTGGAAGTGCCCTGATGAATGAAGGTGATCCCTGTGTTCCAACTCCCTGGGACTGGATAAATTGTAGTACAACTACACCTCCAAGAATTACAAAGATCTTTGATGATAATCCCGAACTGCACAAAGGGAGCAAGAAGCATTTTCAGTTGATGCTAGGAATTTCTATTGGAGTACTAGGGATTCTATTAATATTATTCTTAGCAAGTTTGGTTCTATTGCTTAATCTGCGGAGAAAAACTTCTCGACAGAAACGAGATGAAAAGGGTATTTCTGGGCGCAGCAGTACTAAACCTTTAACTGGATACTCATTTGGTCGGGGTGGAAATTTAATGGATGAAGGTACTGCTTGCTATATTACACTCTCTGAGTTGAAAGAAGCTACTAATAATTTCTCAAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTCTACTATGGGAAAATGAGTGATGGAAAAGAGGTGGCAGTTAAGACTATGACCGATCTATCAAGCTATGGGAACCAGCAATTTGTAAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAATATCAGCATATGCTGGTTTACGAGTATATGCACAATGGCACTTTAAGGGAGTACATTCACGGTCTAATTCCACACCCCGAATGTTCGAACCAGAAGCAATTGGATTGGTTATCTCGCCTTCGAATTGCAGAAGATGCAGCTAGAGGTCTTGAATACTTACACACAGGATGCAATCCAAGTATCATTCACCGTGATGTGAAGACAAGCAATATTCTCCTAGACATCAATATGAGAGCAAAAGTGTCAGATTTTGGACTTTCAAGACTCGCTGAAGAAGATTTAACACACATATCAAGTGTTGCAAGGGGAACTGTAGGTTATCTGGATCCTGAGTACTACGCAAATCAGCAATTGACTGAAAAGAGTGATGTGTATAGTTTTGGAGTCGTTCTGTTGGAACTGATATCAGGAAAAAAACCTGTATCCTCAGAAGACTATGGTCCTGAAATGAACATCGTTCACTGGGTAAGATCCTTAATTCGTAAAGGAGATGTGATGAGCATAATGGATCCTTCCCTTGTGGGGAATGCCAAAACTGAATCAATTTGGAGGGTTGCTGAAATTGCTATGCAATGTGTAGAACAACACGGTGCCTACAGGCCAAAAATGCAAGAGGTCATTTTGGCCATACAAGATGCTTCTAGCATTGAAAAAGGCACAGAAAATCAACTCAAGTTATCATCTTCGAGCTGTTCAAAGCCACAGTCTTCTCGTAAGACTTTGCTTGCAAGTTTTCTAGAAATTGAGAGCCCTGACTTGTCTAATTCTTGCCTCCCCTCAGCCAGATAA 2394 0.4064 MLLLVLRSHVLCQLEEFISIDCGGTSNYTDKGTGLSWISDSGMMKHGKSVLVQNPRENKVQYQRRRDFPIDSRKYCYTLGSEQRRRYLVRATFQYGILDDGDTYPQFQLYLDATKWATVSIYDATRTYVKEMIFRAPSNSIDVCVCCATTGSPFISTLELRPLNLSMYATDFESSFFLKVAARINFGAPSEDVVRSGTERINTTKKIEIETREYPPVKVMQTAVVGTKGVLSYRLNLEDFPGNARAYAYFAEIEDLAKNETRKFKLEQPYIADYSNAVVNIAENANGTYTLYEPSYMNVSLEFVLSFSFVKTRDSTQGPLLNAMEISKYVQIASKTDRQDSGSALMNEGDPCVPTPWDWINCSTTTPPRITKIFDDNPELHKGSKKHFQLMLGISIGVLGILLILFLASLVLLLNLRRKTSRQKRDEKGISGRSSTKPLTGYSFGRGGNLMDEGTACYITLSELKEATNNFSKKIGKGSFGSVYYGKMSDGKEVAVKTMTDLSSYGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHMLVYEYMHNGTLREYIHGLIPHPECSNQKQLDWLSRLRIAEDAARGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSSEDYGPEMNIVHWVRSLIRKGDVMSIMDPSLVGNAKTESIWRVAEIAMQCVEQHGAYRPKMQEVILAIQDASSIEKGTENQLKLSSSSCSKPQSSRKTLLASFLEIESPDLSNSCLPSAR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01553 797 PANTHER OS07G0107800 PROTEIN-RELATED 384 748 - -
Vimu6g01553 797 Gene3D Transferase(Phosphotransferase) domain 1 545 768 - -
Vimu6g01553 797 ProSiteProfiles Protein kinase domain profile. 469 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01553 797 FunFam receptor-like serine/threonine-protein kinase NCRK 449 544 - -
Vimu6g01553 797 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 545 758 - -
Vimu6g01553 797 Pfam Malectin-like domain 20 328 IPR024788 -
Vimu6g01553 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Vimu6g01553 797 SUPERFAMILY Protein kinase-like (PK-like) 455 742 IPR011009 -
Vimu6g01553 797 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Vimu6g01553 797 Gene3D Phosphorylase Kinase; domain 1 448 544 - -
Vimu6g01553 797 SMART serkin_6 469 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01553 797 Pfam Protein tyrosine and serine/threonine kinase 471 742 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01553 Vimu-Chr6 14532251 14537639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01553 374 797 Receptor kinase-like Gene Family AT1G67720 69.249 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu6g01553 Malectin_like 5.3e-75 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01553 - - gmx:100807148 728.013