Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01550 ATGGATAATGGGTGTTTTTCTTCCCCTCGACGTGATTTCCCTGCTGGTCTGCGAGTCCTCGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGCTGCTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAGTTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTGATGAGGAATGGATCAGAAATATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATATTATAATCTTTTGTGCATGTAGTCATCTTATATCTTCCATACAAAAATTATTTATAACAAATAATTTCTGTTTGGCAGAAGTTGGGCCCAAGAAAATACTGGATCTGATGAATGTTCCATGGCTGACTAGAGAGAATGTCGCCAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGAAGATCTTCCTCGAGTGGTATGAAGCATTCAGATTTTCCTTCAAAAGATCTTGGAAGTTTTGGATTCCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAACTGACAGCTACAATTATTCGGATGGATCATTACATCTTCCTACCGTGGAAAATAAAAATCATGAAGGCGATAAGGGAACTGTTTCACAGTTCACCATAGCCAAAAAAGGAAGGCCTTTGACTGGCAACGTGGCCGACTCAAATATCAGAGAGAGTTCAAGGGTTGGCCTCAATCAACCTTTTGCTCAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCTTGCCAACACAGTACTCATGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTAGAAGATAGCTTCAATCAGATGCCGTTACACGGTAAGCAGCACCACATCCAAGTTGATCAATCCCAGTCAGTTGCTTCAATTAGTTCAGCTCCCTCTATAACGGAGGAAGAGGTTCCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCAATCCAGTTCTGTGAATTCAATAGGGAATGCAATTGACACCTTTCCAATTCAACCAGGAAGTCTTGCTATGAACGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAATAACCTCAGTTGCATTTCTGATGTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGATTTGCATTTCCAGTGGCTGCAGGGTGAATGTTATAACATGAACTTTGGTCTGCAGAGTATAGGAATGTCAGAATATTATGATCCAGGGCTTATTGCAGAAGCTCCAAGTCACTTATATGATTCAGCCGATTACTCGGTTATAGATCAAGGTCTATTCATAGCATGA 1815 0.4028 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMRNGSEISDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDIIIFCACSHLISSIQKLFITNNFCLAEVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSTDSYNYSDGSLHLPTVENKNHEGDKGTVSQFTIAKKGRPLTGNVADSNIRESSRVGLNQPFAQSEGNHAVFDCSLPTQYSWTEVPHMQLKEEHKSLVHLEDSFNQMPLHGKQHHIQVDQSQSVASISSAPSITEEEVPACIEAKPLFSDFKNDQSSSVNSIGNAIDTFPIQPGSLAMNAQSLEPISTTNSGLKAHGYNNLSCISDVEIYQRNLLLGGEAASAPLDEDLHFQWLQGECYNMNFGLQSIGMSEYYDPGLIAEAPSHLYDSADYSVIDQGLFIA 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01550 604 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vimu6g01550 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 345 IPR045279 GO:0009736
Vimu6g01550 604 Gene3D - 17 186 - -
Vimu6g01550 604 CDD REC_typeB_ARR-like 19 133 - -
Vimu6g01550 604 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vimu6g01550 604 Gene3D - 195 284 - -
Vimu6g01550 604 SMART REC_2 17 129 IPR001789 GO:0000160
Vimu6g01550 604 SUPERFAMILY CheY-like 16 147 IPR011006 -
Vimu6g01550 604 NCBIfam myb-like DNA-binding domain, SHAQKYF class 249 278 IPR006447 GO:0003677
Vimu6g01550 604 FunFam Two-component response regulator 17 197 - -
Vimu6g01550 604 SUPERFAMILY Homeodomain-like 197 280 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01550 Vimu-Chr6 14517687 14521400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01550 13 283 Response Regulator Gene Family AT2G25180 52.190 5.43e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu6g01550 Response_reg 1.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01550 K14491 - gmx:100797421 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01550 6 14517687 14521400 Vimu6g01550 6 14517687 14521400 ECH