Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01544 ATGTATTTGTCGGAGAAGCCGCGTCCAATCGATTTCTACAAGGAGGAAGGCGCGCGCGACATGATGATCGAGGTGGTCTCCAACGGTGAACTCGCGCCTCCGCCGCCGCACCACCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGAGAAGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGGGCCGAGACGTGGGTACAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGTGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTGTGGGAACAGATATCCGCCAAGATGAGGGAGAAGGGTTTTGATCGCTCTCCCACCATGTGCACCGATAAGTGGCGCAACCTCCTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGGGGAGGGAGCGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGACGAGATCCTCAGAGAGAGGAACAAGAACGTGCAGTACAAGAGCCCCACTCCTCCGCCAAAGGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTAGTAGTTCACTCGTCGAACAATCATTTAATTGGTTGTCTTGCTCTACAGGTATTGATGATACTAGCATCTCTTTTGGACCTGTAGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCTGGCGGAGTCCCTCCCTGGAATTGGAGAGAGACTTCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGTGTGATTATACAAGACGAATAGGTATTGACGGCACACCAGAAGCCATCAAAGAGGCAATCAGGGCTGCTTTTAGGTTGAGAACTAAACGCACATTTTGGTTGGAGGATGAGGACCAGATTATCCGAAGTATTGACCGTGAAATGCCTATTGGAAGTTACACTCTTCACCTTGATGAAGGAATGGCCATTAAATTATGTCTCTATGACGAGTCTGAGCACCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAATGATTACCGTGATTTTCTGACCCGGCGGGGTTGGGTATGTCTGAGAGAATTTGACGGATATAGAAATATTGACAATTTGGATGATCTTCGACCTGGTGCTATATATCGTGGTGTGAGTTGA 1185 0.4945 MYLSEKPRPIDFYKEEGARDMMIEVVSNGELAPPPPHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERNKNVQYKSPTPPPKVDSFMQFADKGSSSLVEQSFNWLSCSTGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAAGGVPPWNWRETSGNGGESQSCCGRVISVKWCDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPIGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTENDYRDFLTRRGWVCLREFDGYRNIDNLDDLRPGAIYRGVS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01544 394 SMART sant 62 124 IPR001005 -
Vimu6g01544 394 Gene3D - 66 128 - -
Vimu6g01544 394 FunFam trihelix transcription factor GT-1 66 128 - -
Vimu6g01544 394 PANTHER FI21293P1 46 368 - -
Vimu6g01544 394 CDD GT1 64 129 - -
Vimu6g01544 394 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Vimu6g01544 394 Pfam Myb/SANT-like DNA-binding domain 65 150 IPR044822 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01544 20 393 Trihelix Transcription Factor Family AT3G25990 66.057 7.52e-175 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu6g01544 Myb_DNA-bind_4 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01544 - - ccaj:109807736 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01544 6 14460409 14464343 Vimu6g01544 6 14460409 14464343 ECH