Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01538 ATGGAAGAGGAAATCAAATCCGAATTCAAAAGAAGCGGTTTCGACATCGTAGACGAACAAGAAATTCTCAGAAAATGTGTCACTTTCTGCACCAACTACAGTTTCACTCCTTCTGAACTCGTCTCAAGCTGGGAAGTTCATTACCTCAATAGACAGCTGAATGATCCAATTGTAGAGAGTGCCGAAATTGATGGCTTTCTGTTGCAGCTGCAAAATGAGAAGAAAGAGGACAGTATAAAAGAAAGGGTAGAAGGTGGCTTGCATATATACTCTATCGGAGATGTAGAAATGCACTTAAATAATGATGATGATATAAAGGACGATACTCCTGGAACTCCACTAAATCACCATCATGATCTTTTATCTCCTTCAACTGATCCGACACCTTTAGTGTATGAGAATGTTTTATCTTCTGGGAAAGCATCAAAATCAAAACTAATAACACCCTTTTCAAAGCGAACAGATAGGTTTTCAGTGAAATTTAGCATCAACACTCTCCCTACTGTAGAGAATGGGAAGCAAGAACCTGATCACAAGAATATTGAGAATGATGAAGATGACGTTGTCAGAAGAGTTCCACAACGCGAAAGGTGTTCATTGGTCATTCATGGATCAGGACTCAAACCGGGTTGTAGATTCATGTATGATAGAACGGAGGATAGGCTTAATGCAATAGAAAACCGAATTGGAAAACATACAAGGGCATTTGTAGCTTCTGGTCTCTATGAAGAACCAACAGACCCCACATCTGCTTCACAGAGGAGCATTTTTGCTGTTGGCATGATTTGTTGTGATGCTGAAGGACGTTTAAATGAGAAGTCAGTCATGCTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTTCGCCTTGACTTGCAACGTGTAGACCATTATTCAATTTTTCCTGGCCAGGTAGTTGGTATTAGAGGACACAATCCGAGTGGGCATTGCTTCATTGCATCTAAATTGGTGGATTCTAAACCTATTTCTGTTGCTGATGAGAATTTGAATCCTCTGAAGAAACAAGCTATTGATAAGGAGAGTCAGTCTACTCATACGATTTGTAAACAGAGAGAGTTATCAATGATTATTGCCGCTGGTCCCTTTACTACAACAGACAATTTATTGTTTGAGCCTCTTATAGAACTGCTGCAATATGCAAAACGAAGACCACCACAGTTGCTTATATTGCTGGGACCATTTGTGGATTCTGAGCACCCAGATATTAAGAAAGGAACCGTAGACAGGACTTTTGATGAAATATTTCATTTTGAAATCGTGAGGAAGTTGGAAGATTATGTAGAGCGCGTGGGTTCTGGAACACGTGTTCTTCTTGTTCCATCTATACGAGATGCTAACCATGATTTTGTGTTTCCTCAGCCCGGACTGGAAATTAATTTATCTGATTTCAAATCTCAGATAGTCAGTCTCGCTAATCCTGGAATCTTTGAGGCAAATGAGGTTAAGGTTGGTTGCTGCACCGTGGATGTTCTCAAGCAAATCAGCGGAGAGGAGATATCACGAACTGCAGCAGATGGAAAACCAATTGATCGTATGAGTAGACTTGCAAACCATATCCTCAACCAACAAAGCTTCTATCCACTTTACCCACCCGCAGAAAGTGTCCCCTTGGACTTTTCGCTTGCTCCAGAAGCCCTTCAACTTTCATTGGTTCCGGACGTACTTATCCTACCTTCAGACATCAAGTACTTTGTCAAGGTGCTTAGCAGCGAAAGTGAAGGCATAAATAACACGAAATGCGTAGCTGTCAATCCGGGTAGACTTGCCAAGGGAGAAGGAGGGGGAACTTTTGTCGAGCTTGATTATTGTGGGGATTCCAATCTAATTAACGCTTCAATTGTTGGCATATAA 1875 0.4128 MEEEIKSEFKRSGFDIVDEQEILRKCVTFCTNYSFTPSELVSSWEVHYLNRQLNDPIVESAEIDGFLLQLQNEKKEDSIKERVEGGLHIYSIGDVEMHLNNDDDIKDDTPGTPLNHHHDLLSPSTDPTPLVYENVLSSGKASKSKLITPFSKRTDRFSVKFSINTLPTVENGKQEPDHKNIENDEDDVVRRVPQRERCSLVIHGSGLKPGCRFMYDRTEDRLNAIENRIGKHTRAFVASGLYEEPTDPTSASQRSIFAVGMICCDAEGRLNEKSVMLQSSIEHSGGECVRLDLQRVDHYSIFPGQVVGIRGHNPSGHCFIASKLVDSKPISVADENLNPLKKQAIDKESQSTHTICKQRELSMIIAAGPFTTTDNLLFEPLIELLQYAKRRPPQLLILLGPFVDSEHPDIKKGTVDRTFDEIFHFEIVRKLEDYVERVGSGTRVLLVPSIRDANHDFVFPQPGLEINLSDFKSQIVSLANPGIFEANEVKVGCCTVDVLKQISGEEISRTAADGKPIDRMSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDIKYFVKVLSSESEGINNTKCVAVNPGRLAKGEGGGTFVELDYCGDSNLINASIVGI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01538 624 FunFam DNA polymerase alpha subunit B 344 509 - -
Vimu6g01538 624 PIRSF DNA_pol_alpha_2 1 612 IPR016722 -
Vimu6g01538 624 FunFam DNA polymerase alpha subunit B 1 76 - -
Vimu6g01538 624 Pfam DNA polymerase alpha/epsilon subunit B 364 574 IPR007185 GO:0003677|GO:0006260
Vimu6g01538 624 Gene3D - 514 616 - -
Vimu6g01538 624 Gene3D - 342 510 - -
Vimu6g01538 624 Coils Coil 215 235 - -
Vimu6g01538 624 Gene3D - 1 66 IPR043034 -
Vimu6g01538 624 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 610 IPR016722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01538 Vimu-Chr6 14423504 14434016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01538 2 624 Core DNA Replication Machinery Family AT1G67630 58.626 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01538 K02321 - gmx:100795306 1016.53